Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00110 ATGTGTGTCTGCCCTGTCTGTAGACATTTCATAGCTCCTTGCAAGTGTAAAGGTACATCAAAATATGTTCATCGAGAGTGTTTGGATAATTGGCGAGCAGTTAAGGAAGGATTTGCATTTGCTCACTGCACTACCTGCAAGGCTCCATATCATTTGCGTGTTAATGGTGCTTATAGGATATGGCGTACCTTGAAATTTCGGTTTTTTGTCACCAGAGACATTTTGTTTATATTCCTGGCTGTACAGCTTGTCATTGCTTCACTGGCTTATTTGGTTTATCTAGTAGATGGTTACCAACAGTATTGGCTTCGTCTTGTTTGGAGTTTTGATAGTGAGCTGAGCTTTTACTACATATGTGGAGCTCTGTTGTTTTTTGTGTTGCTTGGCCTGTCTGGGTGCTTCATTACCTGTTATGATGGAAGAATTTGCAATGATTTGGCTCAGCCTTGTCGTGAAATATGTCTTTGTTGCTGTCAACATGGTTATTGCAGAGTTTGTGCGGACAGTCGTATGTGGACGGATTGCACTGCATGCTTTGAGAGTTGTGGAAACATGGCAACTGAATGTGGTGGTTGCATGGGAGATGCTGAGGAAGGAAGGCTACCATGTTTATTCATAATGGCTTTGATTTTTCTGGGACTCTTTACTGTGTTTGGGATATTTTACTGTGTATTAGTGGCTACCATGGTCGGACAACGGATTTGGCAGCGTCATTATCACATACTTGCGAAAAGGATGCTAACAAAGGAGTATGTCGTTGAGGACATCGCTGGAGAAATAACAGGGTCTGATTGGTCTCCTCCATCTCTCCCACCTGAGCATGTTCAGCAGCTGAAAACATTGCGCCTCCTAGAGTGTGAAGGAGTCAATCTACCTGCTGAGGAGAATGACCGTAGAGGTAACACTGGCACCGTGTTTGGTAGTCTGGTCCTTGTCAGGGAGATATGCAATTAG 954 0.4361 MCVCPVCRHFIAPCKCKGTSKYVHRECLDNWRAVKEGFAFAHCTTCKAPYHLRVNGAYRIWRTLKFRFFVTRDILFIFLAVQLVIASLAYLVYLVDGYQQYWLRLVWSFDSELSFYYICGALLFFVLLGLSGCFITCYDGRICNDLAQPCREICLCCCQHGYCRVCADSRMWTDCTACFESCGNMATECGGCMGDAEEGRLPCLFIMALIFLGLFTVFGIFYCVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDIAGEITGSDWSPPSLPPEHVQQLKTLRLLECEGVNLPAEENDRRGNTGTVFGSLVLVREICN 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00110 317 ProSiteProfiles Zinc finger RING-CH-type profile. 1 53 IPR011016 GO:0008270
Gabi606g00110 317 SMART ringv_2 3 47 IPR011016 GO:0008270
Gabi606g00110 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 58 IPR013083 -
Gabi606g00110 317 SUPERFAMILY RING/U-box 3 51 - -
Gabi606g00110 317 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 7 283 - -
Gabi606g00110 317 Pfam RING-variant domain 8 46 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00110 Gabi-Chr606 968713 973415 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00110 8 284 C3H Transcription Factor Family AT2G22120 76.512 2.06e-148 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00110 - - gmx:100791777 501.13