Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00109 ATGGCGTTAGATTCTTCTCTAATCCCTCCTTCACCCATCACGGTGATCGACCTCGAAGCTGGTTCCACCGAACTAATTCAGTGCCGTATATGTTTTGAAACTGAAGGTAGACATTTCATAGCTCCTTGCAAGTGTAAAGGTACATCAAAATATGTTCATCGAGAGTGTTTGGATAATTGGCGAGCAGTTAAGGTCATTGCTTCACTGGCTTATTTGGTTTATCTAGTAGATGGTTACCAACAGTATTGGCTTCGTCTTGTTTGGAGTTTTGATAGTGAGCTGAGCTTTTACTACATATGTGGAGCTCTGTTGTTTTTTGTGTTGCTTGGCCTGTCTGGGTGCTTCATTACCTGTTATGATGGAAGAATTTGCAATGATTTGGCTCAGCCTTGTCGTGAAATATGTCTTTGTTGCTGTCAACATGGTTATTGCAGAGTTTGTGCGGACAGTCGTATGTGGACGGATTGCACTGCATGCTTTGAGAGTTGTGGAAACATGGCAACTGAATGTGGTGGTTGCATGGGAGATGCTGAGGAAGGAAGGCTACCATGTTTATTCATAATGGCTTTGATTTTTCTGGGACTCTTTACTGTGTTTGGGATATTTTACTGTGTATTAGTGGCTACCATGGTCGGACAACGGATTTGGCAGCGTCATTATCACATACTTGCGAAAAGGATGCTAACAAAGGAGTATGTCGTTGAGGACATCGCTGGAGAAATAACAGGGTCTGATTGGTCTCCTCCATCTCTCCCACCTGAGCATGTTCAGCAGCTGAAAACATTGCGCCTCCTAGAGTGTGAAGGAGTCAATCTACCTGCTGAGGAGAATGACCGTAGAGGTAACACTGGCACCGTGTTTGGTAGTCTGGTCCTTGTCAGGGAGATATGCAATTAG 897 0.4415 MALDSSLIPPSPITVIDLEAGSTELIQCRICFETEGRHFIAPCKCKGTSKYVHRECLDNWRAVKVIASLAYLVYLVDGYQQYWLRLVWSFDSELSFYYICGALLFFVLLGLSGCFITCYDGRICNDLAQPCREICLCCCQHGYCRVCADSRMWTDCTACFESCGNMATECGGCMGDAEEGRLPCLFIMALIFLGLFTVFGIFYCVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDIAGEITGSDWSPPSLPPEHVQQLKTLRLLECEGVNLPAEENDRRGNTGTVFGSLVLVREICN 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00109 298 CDD RING_CH-C4HC3_MARCH 28 64 - -
Gabi606g00109 298 Pfam RING-variant domain 28 61 IPR011016 GO:0008270
Gabi606g00109 298 SUPERFAMILY RING/U-box 23 65 - -
Gabi606g00109 298 ProSiteProfiles Zinc finger RING-CH-type profile. 20 64 IPR011016 GO:0008270
Gabi606g00109 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 68 IPR013083 -
Gabi606g00109 298 SMART ringv_2 27 68 IPR011016 GO:0008270
Gabi606g00109 298 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 20 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00109 Gabi-Chr606 968110 973415 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00109 5 265 C3H Transcription Factor Family AT2G22120 61.514 8.85e-123 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00109 - - gmx:100791777 432.18