Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00108 ATGGCGTTAGATTCTTCTCTAATCCCTCCTTCACCCATCACGGTGATCGACCTCGAAGCTGGTTCCACCGAACTAATTCAGTGCCGTATATGTTTTGAAACTGAAGGTAGACATTTCATAGCTCCTTGCAAGTGTAAAGGTACATCAAAATATGTTCATCGAGAGTGTTTGGATAATTGGCGAGCAGTTAAGGAAGGATTTGCATTTGCTCACTGCACTACCTGCAAGGCTCCATATCATTTGCGTGTTAATGGTGCTTATAGGATATGGCGTACCTTGAAATTTCGGTTTTTTGTCACCAGAGACATTTTGTTTATATTCCTGGCTGTACAGCTTGTCATTGCTTCACTGGCTTATTTGGTTTATCTAGTAGATGGTTACCAACAGTATTGGCTTCGTCTTGTTTGGAGTTTTGATAGTGAGCTGAGCTTTTACTACATATGTGGAGCTCTGTTGTTTTTTGTGTTGCTTGGCCTGTCTGGGTGCTTCATTACCTGTTATGATGGAAGAATTTGCAATGATTTGGCTCAGCCTTGTCGTGAAATATGTCTTTGTTGCTGTCAACATGGAGTTTGTGCGGACAGTCGTATGTGGACGGATTGCACTGCATGCTTTGAGAGTTGTGGAAACATGGCAACTGAATGTGGTGGTTGCATGGGAGATGCTGAGGAAGGAAGGCTACCATGTTTATTCATAATGGCTTTGATTTTTCTGGGACTCTTTACTGTGTTTGGGATATTTTACTGTGTATTAGTGGCTACCATGGTCGGACAACGGATTTGGCAGCGTCATTATCACATACTTGCGAAAAGGATGCTAACAAAGGAGTATGTCGTTGAGGACATCGCTGGAGAAATAACAGGGTCTGATTGGTCTCCTCCATCTCTCCCACCTGAGCATGTTCAGCAGCTGAAAACATTGCGCCTCCTAGAGTGTGAAGGAGTCAATCTACCTGCTGAGGAGAATGACCGTAGAGGTAACACTGGCACCGTGTTTGGTAGTCTGGTCCTTGTCAGGGAGATATGCAATTAG 1032 0.438 MALDSSLIPPSPITVIDLEAGSTELIQCRICFETEGRHFIAPCKCKGTSKYVHRECLDNWRAVKEGFAFAHCTTCKAPYHLRVNGAYRIWRTLKFRFFVTRDILFIFLAVQLVIASLAYLVYLVDGYQQYWLRLVWSFDSELSFYYICGALLFFVLLGLSGCFITCYDGRICNDLAQPCREICLCCCQHGVCADSRMWTDCTACFESCGNMATECGGCMGDAEEGRLPCLFIMALIFLGLFTVFGIFYCVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDIAGEITGSDWSPPSLPPEHVQQLKTLRLLECEGVNLPAEENDRRGNTGTVFGSLVLVREICN 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00108 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 87 IPR013083 -
Gabi606g00108 343 SMART ringv_2 27 76 IPR011016 GO:0008270
Gabi606g00108 343 ProSiteProfiles Zinc finger RING-CH-type profile. 20 82 IPR011016 GO:0008270
Gabi606g00108 343 SUPERFAMILY RING/U-box 23 80 - -
Gabi606g00108 343 CDD RING_CH-C4HC3_MARCH 28 76 - -
Gabi606g00108 343 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 21 309 - -
Gabi606g00108 343 Pfam RING-variant domain 28 75 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00108 Gabi-Chr606 968110 973415 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00108 5 310 C3H Transcription Factor Family AT2G22120 74.763 2.41e-164 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00108 - - gmx:100791777 543.888