Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00106 ATGGCGTTAGATTCTTCTCTAATCCCTCCTTCACCCATCACGGTGATCGACCTCGAAGCTGGTTCCACCGAACTAATTCAGTGCCGTATATGTTTTGAAACTGAAGGCTCGGCTCGAACTCCAGACCTAAGGGCCCGGATTCCTTACCATTTGTGTTTTGGTAGACATTTCATAGCTCCTTGCAAGTGTAAAGGTACATCAAAATATGTTCATCGAGAGTGTTTGGATAATTGGCGAGCAGTTAAGGTCATTGCTTCACTGGCTTATTTGGTTTATCTAGTAGATGGTTACCAACAGTATTGGCTTCGTCTTGTTTGGAGTTTTGATAGTGAGCTGAGCTTTTACTACATATGTGGAGCTCTGTTGTTTTTTGTGTTGCTTGGCCTGTCTGGGTGCTTCATTACCTGTTATGATGGAAGAATTTGCAATGATTTGGCTCAGCCTTGTCGTGAAATATGTCTTTGTTGCTGTCAACATGGTTATTGCAGAGTTTGTGCGGACAGTCGTATGTGGACGGATTGCACTGCATGCTTTGAGAGTTGTGGAAACATGGCAACTGAATGTGGTGGTTGCATGGGAGATGCTGAGGAAGGAAGGCTACCATGTTTATTCATAATGGCTTTGATTTTTCTGGGACTCTTTACTGTGTTTGGGATATTTTACTGTGTATTAGTGGCTACCATGGTCGGACAACGGATTTGGCAGCGTCATTATCACATACTTGCGAAAAGGATGCTAACAAAGGAGTATGTCGTTGAGGACATCGCTGGAGAAATAACAGGGTCTGATTGGTCTCCTCCATCTCTCCCACCTGAGCATGTTCAGCAGCTGAAAACATTGCGCCTCCTAGAGTGTGAAGGAGTCAATCTACCTGCTGAGGAGAATGACCGTAGAGGTAACACTGGCACCGTGTTTGGTAGTCTGGTCCTTGTCAGGGAGATATGCAATTAG 951 0.4469 MALDSSLIPPSPITVIDLEAGSTELIQCRICFETEGSARTPDLRARIPYHLCFGRHFIAPCKCKGTSKYVHRECLDNWRAVKVIASLAYLVYLVDGYQQYWLRLVWSFDSELSFYYICGALLFFVLLGLSGCFITCYDGRICNDLAQPCREICLCCCQHGYCRVCADSRMWTDCTACFESCGNMATECGGCMGDAEEGRLPCLFIMALIFLGLFTVFGIFYCVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDIAGEITGSDWSPPSLPPEHVQQLKTLRLLECEGVNLPAEENDRRGNTGTVFGSLVLVREICN 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00106 316 ProSiteProfiles Zinc finger RING-CH-type profile. 20 82 IPR011016 GO:0008270
Gabi606g00106 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 92 IPR013083 -
Gabi606g00106 316 SUPERFAMILY RING/U-box 24 82 - -
Gabi606g00106 316 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 21 82 - -
Gabi606g00106 316 Pfam RING-variant domain 28 79 IPR011016 GO:0008270
Gabi606g00106 316 SMART ringv_2 27 86 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00106 Gabi-Chr606 968110 973415 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00106 5 283 C3H Transcription Factor Family AT2G22120 58.209 7.29e-118 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00106 - - gmx:100791777 414.461