Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00105 ATGGCGTTAGATTCTTCTCTAATCCCTCCTTCACCCATCACGGTGATCGACCTCGAAGCTGGTTCCACCGAACTAATTCAGTGCCGTATATGTTTTGAAACTGAAGGCTCGGCTCGAACTCCAGACCTAAGGGCCCGGATTCCTTACCATTTGTGTTTTGGTAGACATTTCATAGCTCCTTGCAAGTGTAAAGGTACATCAAAATATGTTCATCGAGAGTGTTTGGATAATTGGCGAGCAGTTAAGGAAGGATTTGCATTTGCTCACTGCACTACCTGCAAGGCTCCATATCATTTGCGTGTTAATGGTGCTTATAGGATATGGCGTACCTTGAAATTTCGGTTTTTTGTCACCAGAGACATTTTGTTTATATTCCTGGCTGTACAGCTTGTCATTGCTTCACTGGCTTATTTGGTTTATCTAGTAGATGGTTACCAACAGTATTGGCTTCGTCTTGTTTGGAGTTTTGATAGTGAGCTGAGCTTTTACTACATATGTGGAGCTCTGTTGTTTTTTGTGTTGCTTGGCCTGTCTGGGTGCTTCATTACCTGTTATGATGGAAGAATTTGCAATGATTTGGCTCAGCCTTGTCGTGAAATATGTCTTTGTTGCTGTCAACATGGTTATTGCAGAGTTTGTGCGGACAGTCGTATGTGGACGGATTGCACTGCATGCTTTGAGAGTTGTGGAAACATGGCAACTGAATGTGGTGGTTGCATGGGAGATGCTGAGGAAGGAAGGCTACCATGTTTATTCATAATGGCTTTGATTTTTCTGGGACTCTTTACTGTGTTTGGGATATTTTACTGTGTATTAGTGGCTACCATGGTCGGACAACGGATTTGGCAGCGTCATTATCACATACTTGCGAAAAGGATGCTAACAAAGGAGTATGTCGTTGAGGACATCGCTGGAGAAATAACAGGGTCTGATTGGTCTCCTCCATCTCTCCCACCTGAGCATGTTCAGCAGCTGAAAACATTGCGCCTCCTAGAGTGTGAAGGAGTCAATCTACCTGCTGAGGAGAATGACCGTAGAGGTAACACTGGCACCGTGTTTGGTAGTCTGGTCCTTGTCAGGGAGATATGCAATTAG 1095 0.442 MALDSSLIPPSPITVIDLEAGSTELIQCRICFETEGSARTPDLRARIPYHLCFGRHFIAPCKCKGTSKYVHRECLDNWRAVKEGFAFAHCTTCKAPYHLRVNGAYRIWRTLKFRFFVTRDILFIFLAVQLVIASLAYLVYLVDGYQQYWLRLVWSFDSELSFYYICGALLFFVLLGLSGCFITCYDGRICNDLAQPCREICLCCCQHGYCRVCADSRMWTDCTACFESCGNMATECGGCMGDAEEGRLPCLFIMALIFLGLFTVFGIFYCVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDIAGEITGSDWSPPSLPPEHVQQLKTLRLLECEGVNLPAEENDRRGNTGTVFGSLVLVREICN 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00105 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 101 IPR013083 -
Gabi606g00105 364 SMART ringv_2 27 94 IPR011016 GO:0008270
Gabi606g00105 364 Pfam RING-variant domain 28 93 IPR011016 GO:0008270
Gabi606g00105 364 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 21 330 - -
Gabi606g00105 364 ProSiteProfiles Zinc finger RING-CH-type profile. 20 100 IPR011016 GO:0008270
Gabi606g00105 364 CDD RING_CH-C4HC3_MARCH 28 94 - -
Gabi606g00105 364 SUPERFAMILY RING/U-box 24 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00105 Gabi-Chr606 968110 973415 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00105 5 331 C3H Transcription Factor Family AT2G22120 70.746 8.01e-158 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00105 - - gmx:100791777 528.094