Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00104 ATGAGGACTAGTATCCTAGATAGCATGAATCCTTCATCTTCACAGTTTGTTTCCTCAAGAAGGATGGGTGTGTATGATCCTATTCACCAAATTACTATGTGGGAAGAAAATTTCGAAAGTAATGGTTATTTAAGTGCATCCACGTCCTTAATTGATGAAGGGAACATGAAGTTAGATAATCAGGTTCAGTCAAAGGATGCTTCTCATGGGATATTGGGAACACCTACGAAGTATGACCAAGAAGCCAACAAACTTACTAATAAGATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGTTTAAGGAAAAAGGCCTATGTGCAGCAGTTAGAATCATGTCGTTTGAAGTTGATGCAGTTAGAGAGAGAGGTAGATCATGTTAGACAACAGGGATTGTGTATTGATGGTGGATTGGGTTCTAATAATCTGGGTTTTGCTGGCTCTGAAAATTCAGGAATAACAACCTTTAAGATGGAGTATGGAGAATGGATAGAAGAGCAAAATAGACAAATCTTGGAATTGAGAAGTGCTTTAAGTGCTCATATCGATGACATACAGCTGGAAACACTTGTAGATGGCATAATGAACCACTATTTCAAATTCTTTTGCATGAAATCTGCTGCTGCAAAAGCAGATGTTTTTTATGTTATGTCTGGTTTGTGGAAAACAACAACTGAACGACTTTTCTTGTGGATTGGAGGCTTTCGCCCCTCTGAACTTCTAAAGATTCTGGTCCCTCTGTGTGAACCCTTGACAGAGGAAGAACGGTTAGATGCCTGTAGCCTTGAAAAATCATGCCGGCAAGCAGAAGATGCCCTTTCACAAGGTATGAACAAACTCCAGCAAATGCTTGCTGAAACTGTAGAAGCAGGACAACTTGTTGAAGGAACTTACATTCCTCATATGGCTACTGTAATGGAGAGGTCAGAAGCACTGGTAAGCTTTGTCAACCAGGCTGATCATCTAAGACAAGAAACCTTGCAGCAAATGTCTCGAATACTAAGCATACGTCAGAATGCTCGATGGCTGCTTACTTTTGGGGAATATTTTCAACGCCTACGGGCCTTGAGCAAACTTTGGGCTGATCATCCCACTCATGAGTAA 1116 0.4095 MRTSILDSMNPSSSQFVSSRRMGVYDPIHQITMWEENFESNGYLSASTSLIDEGNMKLDNQVQSKDASHGILGTPTKYDQEANKLTNKIQRRLAQNREAARKSRLRKKAYVQQLESCRLKLMQLEREVDHVRQQGLCIDGGLGSNNLGFAGSENSGITTFKMEYGEWIEEQNRQILELRSALSAHIDDIQLETLVDGIMNHYFKFFCMKSAAAKADVFYVMSGLWKTTTERLFLWIGGFRPSELLKILVPLCEPLTEEERLDACSLEKSCRQAEDALSQGMNKLQQMLAETVEAGQLVEGTYIPHMATVMERSEALVSFVNQADHLRQETLQQMSRILSIRQNARWLLTFGEYFQRLRALSKLWADHPTHE 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00104 371 Coils Coil 270 290 - -
Gabi606g00104 371 SUPERFAMILY Leucine zipper domain 88 133 IPR046347 GO:0003700|GO:0006355
Gabi606g00104 371 Pfam bZIP transcription factor 88 116 IPR004827 GO:0003700|GO:0006355
Gabi606g00104 371 PANTHER TRANSCRIPTION FACTOR TGA9 12 369 - -
Gabi606g00104 371 SMART brlzneu 83 137 IPR004827 GO:0003700|GO:0006355
Gabi606g00104 371 FunFam BZIP family transcription factor 87 136 - -
Gabi606g00104 371 Coils Coil 107 134 - -
Gabi606g00104 371 Pfam Seed dormancy control 175 249 IPR025422 GO:0006351|GO:0043565
Gabi606g00104 371 Coils Coil 168 188 - -
Gabi606g00104 371 Gene3D - 87 136 - -
Gabi606g00104 371 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 91 106 IPR004827 GO:0003700|GO:0006355
Gabi606g00104 371 Coils Coil 82 102 - -
Gabi606g00104 371 ProSiteProfiles DOG1 domain profile. 157 367 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00104 Gabi-Chr606 922551 926308 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00104 9 365 Calmodulin-binding Proteins AT5G65210 62.155 7.41e-167 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi606g00104 DOG1 5.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00104 K14431 - gmx:100780003 558.525