Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00103 ATGAATCCTTCATCTTCACAGTTTGTTTCCTCAAGAAGGATGGGTGTGTATGATCCTATTCACCAAATTACTATGTGGGAAGAAAATTTCGAAAGTAATGGTTATTTAAGTGCATCCACGTCCTTAATTGATGAAGGGAACATGAAGTTAGATAATCAGGTTCAGTCAAAGGATGCTTCTCATGGGATATTGGGAACACCTACGAAGTATGACCAAGAAGCCAACAAACTTACTAATAAGATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGTTTAAGGAAAAAGGCCTATGTGCAGCAGTTAGAATCATGTCGTTTGAAGTTGATGCAGTTAGAGAGAGAGGTAGATCATGTTAGACAACAGGGATTGTGTATTGATGGTGGATTGGGTTCTAATAATCTGGGTTTTGCTGGCTCTGAAAATTCAGGAATAACAACCTTTAAGATGGAGTATGGAGAATGGATAGAAGAGCAAAATAGACAAATCTTGGAATTGAGAAGTGCTTTAAGTGCTCATATCGATGACATACAGCTGGAAACACTTGTAGATGGCATAATGAACCACTATTTCAAATTCTTTTGCATGAAATCTGCTGCTGCAAAAGCAGATGTTTTTTATGTTATGTCTGGTTTGTGGAAAACAACAACTGAACGACTTTTCTTGTGGATTGGAGGCTTTCGCCCCTCTGAACTTCTAAAGATTCTGGTCCCTCTGTGTGAACCCTTGACAGAGGAAGAACGGTTAGATGCCTGTAGCCTTGAAAAATCATGCCGGCAAGCAGAAGATGCCCTTTCACAAGGTATGAACAAACTCCAGCAAATGCTTGCTGAAACTGTAGAAGCAGGACAACTTGTTGAAGGAACTTACATTCCTCATATGGCTACTGTAATGGAGAGGTCAGAAGCACTGGTAAGCTTTGTCAACCAGGCTGATCATCTAAGACAAGAAACCTTGCAGCAAATGTCTCGAATACTAAGCATACGTCAGAATGCTCGATGGCTGCTTACTTTTGGGGAATATTTTCAACGCCTACGGGCCTTGAGCAAACTTTGGGCTGATCATCCCACTCATGAGTAA 1092 0.4093 MNPSSSQFVSSRRMGVYDPIHQITMWEENFESNGYLSASTSLIDEGNMKLDNQVQSKDASHGILGTPTKYDQEANKLTNKIQRRLAQNREAARKSRLRKKAYVQQLESCRLKLMQLEREVDHVRQQGLCIDGGLGSNNLGFAGSENSGITTFKMEYGEWIEEQNRQILELRSALSAHIDDIQLETLVDGIMNHYFKFFCMKSAAAKADVFYVMSGLWKTTTERLFLWIGGFRPSELLKILVPLCEPLTEEERLDACSLEKSCRQAEDALSQGMNKLQQMLAETVEAGQLVEGTYIPHMATVMERSEALVSFVNQADHLRQETLQQMSRILSIRQNARWLLTFGEYFQRLRALSKLWADHPTHE 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00103 363 Coils Coil 262 282 - -
Gabi606g00103 363 Pfam Seed dormancy control 167 241 IPR025422 GO:0006351|GO:0043565
Gabi606g00103 363 ProSiteProfiles DOG1 domain profile. 149 359 IPR025422 GO:0006351|GO:0043565
Gabi606g00103 363 PANTHER TRANSCRIPTION FACTOR TGA9 4 361 - -
Gabi606g00103 363 Coils Coil 99 126 - -
Gabi606g00103 363 FunFam BZIP family transcription factor 79 128 - -
Gabi606g00103 363 Gene3D - 79 128 - -
Gabi606g00103 363 SUPERFAMILY Leucine zipper domain 80 125 IPR046347 GO:0003700|GO:0006355
Gabi606g00103 363 SMART brlzneu 75 129 IPR004827 GO:0003700|GO:0006355
Gabi606g00103 363 Coils Coil 160 180 - -
Gabi606g00103 363 Coils Coil 74 94 - -
Gabi606g00103 363 Pfam bZIP transcription factor 80 108 IPR004827 GO:0003700|GO:0006355
Gabi606g00103 363 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 83 98 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00103 Gabi-Chr606 922550 926275 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00103 1 357 Calmodulin-binding Proteins AT5G65210 62.155 1.21e-166 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi606g00103 DOG1 5.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00103 K14431 - gmx:100780003 558.525