Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00102 ATGAGGACTAGTATCCTAGATAGCATGAATCCTTCATCTTCACAGTTTGTTTCCTCAAGAAGGATGGGTGTGTATGATCCTATTCACCAAATTACTATGTGGGAAGAAAATTTCGAAAGTAATGGTTATTTAAGTGCATCCACGTCCTTAATTGATGAAGGGAACATGAAGTTAGATAATCAGGTTCAGTCAAAGGATGCTTCTCATGGGATATTGGGAACACCTACGAAGTATGACCAAGAAGCCAACAAACTTACTAATAAGATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGTTTAAGGAAAAAGGCCTATGTGCAGCAGTTAGAATCATGTCGTTTGAAGTTGATGCAGTTAGAGAGAGAGGTAGATCATGTTAGACAACAGGGATTGTGTATTGATGGTGGATTGGGTTCTAATAATCTGGGTTTTGCTGGCTCTGAAAATTCAGGAATAACAACCTTTAAGATGGAGTATGGAGAATGGATAGAAGAGCAAAATAGACAAATCTTGGAATTGAGAAGTGCTTTAAGTGCTCATATCGATGACATACAGCTGGAAACACTTGTAGATGGCATAATGAACCACTATTTCAAATTCTTTTGCATGAAATCTGCTGCTGCAAAAGCAGATGTTTTTTATGTTATGTCTGGTTTGTGGAAAACAACAACTGAACGACTTTTCTTGTGGATTGGAGGCTTTCGCCCCTCTGAACTTCTAAAGATTCTGGTCCCTCTGTGTGAACCCTTGACAGAGGAAGAACGGTTAGATGCCTGTAGCCTTGAAAAATCATGCCGGCAAGCAGAAGATGCCCTTTCACAAGGTATGAACAAACTCCAGCAAATGCTTGCTGAAACTGTAGAAGCAGGACAACTTGTTGAAGGAACTTACATTCCTCATATGGCTACTGTAATGGAGAGGTCAGAAGCACTGGCTGATCATCTAAGACAAGAAACCTTGCAGCAAATGTCTCGAATACTAAGCATACGTCAGAATGCTCGATGGCTGCTTACTTTTGGGGAATATTTTCAACGCCTACGGGCCTTGAGCAAACTTTGGGCTGATCATCCCACTCATGAGTAA 1098 0.4089 MRTSILDSMNPSSSQFVSSRRMGVYDPIHQITMWEENFESNGYLSASTSLIDEGNMKLDNQVQSKDASHGILGTPTKYDQEANKLTNKIQRRLAQNREAARKSRLRKKAYVQQLESCRLKLMQLEREVDHVRQQGLCIDGGLGSNNLGFAGSENSGITTFKMEYGEWIEEQNRQILELRSALSAHIDDIQLETLVDGIMNHYFKFFCMKSAAAKADVFYVMSGLWKTTTERLFLWIGGFRPSELLKILVPLCEPLTEEERLDACSLEKSCRQAEDALSQGMNKLQQMLAETVEAGQLVEGTYIPHMATVMERSEALADHLRQETLQQMSRILSIRQNARWLLTFGEYFQRLRALSKLWADHPTHE 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00102 365 Coils Coil 270 290 - -
Gabi606g00102 365 SMART brlzneu 83 137 IPR004827 GO:0003700|GO:0006355
Gabi606g00102 365 Pfam bZIP transcription factor 88 116 IPR004827 GO:0003700|GO:0006355
Gabi606g00102 365 Pfam Seed dormancy control 175 249 IPR025422 GO:0006351|GO:0043565
Gabi606g00102 365 SUPERFAMILY Leucine zipper domain 88 133 IPR046347 GO:0003700|GO:0006355
Gabi606g00102 365 Coils Coil 107 134 - -
Gabi606g00102 365 PANTHER TRANSCRIPTION FACTOR TGA9 12 363 - -
Gabi606g00102 365 Gene3D - 87 136 - -
Gabi606g00102 365 Coils Coil 168 188 - -
Gabi606g00102 365 ProSiteProfiles DOG1 domain profile. 157 361 IPR025422 GO:0006351|GO:0043565
Gabi606g00102 365 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 91 106 IPR004827 GO:0003700|GO:0006355
Gabi606g00102 365 Coils Coil 82 102 - -
Gabi606g00102 365 FunFam BZIP family transcription factor 87 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00102 Gabi-Chr606 922549 926308 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00102 9 359 Calmodulin-binding Proteins AT5G65210 60.497 2.16e-159 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi606g00102 DOG1 5.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00102 K14431 - gmx:100780003 540.806