Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00101 ATGAGGACTAGTATCCTAGATAGCATGAATCCTTCATCTTCACAGTTTGTTTCCTCAAGAAGGATGGGTGTGTATGATCCTATTCACCAAATTACTATGTGGGAAGAAAATTTCGAAAGTAATGGTTATTTAAGTGCATCCACGTCCTTAATTGATGAAGGGAACATGAAGTTAGATAATCAGTCAAAGGATGCTTCTCATGGGATATTGGGAACACCTACGAAGTATGACCAAGAAGCCAACAAACTTACTAATAAGATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGTTTAAGGAAAAAGGCCTATGTGCAGCAGTTAGAATCATGTCGTTTGAAGTTGATGCAGTTAGAGAGAGAGGTAGATCATGTTAGACAACAGGGATTGTGTATTGATGGTGGATTGGGTTCTAATAATCTGGGTTTTGCTGGCTCTGAAAATTCAGGAATAACAACCTTTAAGATGGAGTATGGAGAATGGATAGAAGAGCAAAATAGACAAATCTTGGAATTGAGAAGTGCTTTAAGTGCTCATATCGATGACATACAGCTGGAAACACTTGTAGATGGCATAATGAACCACTATTTCAAATTCTTTTGCATGAAATCTGCTGCTGCAAAAGCAGATGTTTTTTATGTTATGTCTGGTTTGTGGAAAACAACAACTGAACGACTTTTCTTGTGGATTGGAGGCTTTCGCCCCTCTGAACTTCTAAAGATTCTGGTCCCTCTGTGTGAACCCTTGACAGAGGAAGAACGGTTAGATGCCTGTAGCCTTGAAAAATCATGCCGGCAAGCAGAAGATGCCCTTTCACAAGGTATGAACAAACTCCAGCAAATGCTTGCTGAAACTGTAGAAGCAGGACAACTTGTTGAAGGAACTTACATTCCTCATATGGCTACTGTAATGGAGAGGTCAGAAGCACTGGTAAGCTTTGTCAACCAGGCTGATCATCTAAGACAAGAAACCTTGCAGCAAATGTCTCGAATACTAAGCATACGTCAGAATGCTCGATGGCTGCTTACTTTTGGGGAATATTTTCAACGCCTACGGGCCTTGAGCAAACTTTGGGCTGATCATCCCACTCATGAGTAA 1110 0.409 MRTSILDSMNPSSSQFVSSRRMGVYDPIHQITMWEENFESNGYLSASTSLIDEGNMKLDNQSKDASHGILGTPTKYDQEANKLTNKIQRRLAQNREAARKSRLRKKAYVQQLESCRLKLMQLEREVDHVRQQGLCIDGGLGSNNLGFAGSENSGITTFKMEYGEWIEEQNRQILELRSALSAHIDDIQLETLVDGIMNHYFKFFCMKSAAAKADVFYVMSGLWKTTTERLFLWIGGFRPSELLKILVPLCEPLTEEERLDACSLEKSCRQAEDALSQGMNKLQQMLAETVEAGQLVEGTYIPHMATVMERSEALVSFVNQADHLRQETLQQMSRILSIRQNARWLLTFGEYFQRLRALSKLWADHPTHE 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00101 369 SMART brlzneu 81 135 IPR004827 GO:0003700|GO:0006355
Gabi606g00101 369 Coils Coil 166 186 - -
Gabi606g00101 369 ProSiteProfiles DOG1 domain profile. 155 365 IPR025422 GO:0006351|GO:0043565
Gabi606g00101 369 Coils Coil 80 100 - -
Gabi606g00101 369 SUPERFAMILY Leucine zipper domain 86 131 IPR046347 GO:0003700|GO:0006355
Gabi606g00101 369 Coils Coil 268 288 - -
Gabi606g00101 369 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 89 104 IPR004827 GO:0003700|GO:0006355
Gabi606g00101 369 Gene3D - 85 134 - -
Gabi606g00101 369 PANTHER TRANSCRIPTION FACTOR TGA9 12 367 - -
Gabi606g00101 369 Pfam Seed dormancy control 173 247 IPR025422 GO:0006351|GO:0043565
Gabi606g00101 369 Pfam bZIP transcription factor 86 114 IPR004827 GO:0003700|GO:0006355
Gabi606g00101 369 Coils Coil 105 132 - -
Gabi606g00101 369 FunFam BZIP family transcription factor 85 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00101 Gabi-Chr606 922549 926308 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00101 9 363 Calmodulin-binding Proteins AT5G10030 63.585 3.85e-167 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi606g00101 DOG1 5.6e-28 No_clan