Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00100 ATGAGGACTAGTATCCTAGATAGCATGAATCCTTCATCTTCACAGTTTGTTTCCTCAAGAAGGATGGGTGTGTATGATCCTATTCACCAAATTACTATGTGGGAAGAAAATTTCGAAAGTAATGGTTATTTAAGTGCATCCACGTCCTTAATTGATGAAGGGAACATGAAGTTAGATAAGTCAAAGGATGCTTCTCATGGGATATTGGGAACACCTACGAAGTATGACCAAGAAGCCAACAAACTTACTAATAAGATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGTTTAAGGAAAAAGGCCTATGTGCAGCAGTTAGAATCATGTCGTTTGAAGTTGATGCAGTTAGAGAGAGAGGTAGATCATGTTAGACAACAGGGATTGTGTATTGATGGTGGATTGGGTTCTAATAATCTGGGTTTTGCTGGCTCTGAAAATTCAGGAATAACAACCTTTAAGATGGAGTATGGAGAATGGATAGAAGAGCAAAATAGACAAATCTTGGAATTGAGAAGTGCTTTAAGTGCTCATATCGATGACATACAGCTGGAAACACTTGTAGATGGCATAATGAACCACTATTTCAAATTCTTTTGCATGAAATCTGCTGCTGCAAAAGCAGATGTTTTTTATGTTATGTCTGGTTTGTGGAAAACAACAACTGAACGACTTTTCTTGTGGATTGGAGGCTTTCGCCCCTCTGAACTTCTAAAGATTCTGGTCCCTCTGTGTGAACCCTTGACAGAGGAAGAACGGTTAGATGCCTGTAGCCTTGAAAAATCATGCCGGCAAGCAGAAGATGCCCTTTCACAAGGTATGAACAAACTCCAGCAAATGCTTGCTGAAACTGTAGAAGCAGGACAACTTGTTGAAGGAACTTACATTCCTCATATGGCTACTGTAATGGAGAGGTCAGAAGCACTGGTAAGCTTTGTCAACCAGGCTGATCATCTAAGACAAGAAACCTTGCAGCAAATGTCTCGAATACTAAGCATACGTCAGAATGCTCGATGGCTGCTTACTTTTGGGGAATATTTTCAACGCCTACGGGCCTTGAGCAAACTTTGGGCTGATCATCCCACTCATGAGTAA 1107 0.4092 MRTSILDSMNPSSSQFVSSRRMGVYDPIHQITMWEENFESNGYLSASTSLIDEGNMKLDKSKDASHGILGTPTKYDQEANKLTNKIQRRLAQNREAARKSRLRKKAYVQQLESCRLKLMQLEREVDHVRQQGLCIDGGLGSNNLGFAGSENSGITTFKMEYGEWIEEQNRQILELRSALSAHIDDIQLETLVDGIMNHYFKFFCMKSAAAKADVFYVMSGLWKTTTERLFLWIGGFRPSELLKILVPLCEPLTEEERLDACSLEKSCRQAEDALSQGMNKLQQMLAETVEAGQLVEGTYIPHMATVMERSEALVSFVNQADHLRQETLQQMSRILSIRQNARWLLTFGEYFQRLRALSKLWADHPTHE 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00100 368 Coils Coil 104 131 - -
Gabi606g00100 368 Coils Coil 267 287 - -
Gabi606g00100 368 PANTHER TRANSCRIPTION FACTOR TGA9 12 366 - -
Gabi606g00100 368 ProSiteProfiles DOG1 domain profile. 154 364 IPR025422 GO:0006351|GO:0043565
Gabi606g00100 368 SUPERFAMILY Leucine zipper domain 85 130 IPR046347 GO:0003700|GO:0006355
Gabi606g00100 368 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 88 103 IPR004827 GO:0003700|GO:0006355
Gabi606g00100 368 SMART brlzneu 80 134 IPR004827 GO:0003700|GO:0006355
Gabi606g00100 368 Pfam Seed dormancy control 172 246 IPR025422 GO:0006351|GO:0043565
Gabi606g00100 368 Pfam bZIP transcription factor 85 113 IPR004827 GO:0003700|GO:0006355
Gabi606g00100 368 Coils Coil 79 99 - -
Gabi606g00100 368 FunFam BZIP family transcription factor 84 133 - -
Gabi606g00100 368 Gene3D - 84 133 - -
Gabi606g00100 368 Coils Coil 165 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00100 Gabi-Chr606 922548 926308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00100 9 362 Calmodulin-binding Proteins AT5G10030 63.585 9.32e-166 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi606g00100 DOG1 5.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00100 K14431 - gmx:100780003 550.051