Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00092 ATGGCAGGGAAGAGAAATCAGACAAGTCCAGTGGGAAGTCCAACATCTGGGAACATCTCAGATAGTTCTTCAAAAGAACAAGACAGGTTCCTCCCTATAGCAAACGTGAGTCGTATCATGAAAAAAGCACTTCCAGCCAATGCTAAAATCTCAAAGGAAGCAAAGGAAACAGTTCAGGAATGTGTGTCAGAGTTCATAAGCTTCATCACTGGTGAAGCCTCTGACAAGTGCCAGAAAGAAAAGAGGAAGACAATTAATGGGGATGATCTTTTGTGGGCTATGACAACACTTGGGTTTGAGAACTATGTTGGACCTTTGAAGGTGTATCTCAACAACTATAGGGAAATTGAGGGAGAAAAGAGTTCTGTGGGTAGACAAGAAGATTATCACTCTCCAATCACAGAAACCAATGATGGGGTAGCTGAAATCAACAAGTTGACTCATTCTGTTTCAACCAAAACAGACTTTCCAAGTTTCAATGGTGGATTCTACTCTGTTGGGTCTCAAGTTACTCCAAAGAGCTTCACAGAGATTGGAGGGATCACAAGTTATAGAGAGAGTTCCATAAACAGGACCATTGCTGAAAGTGCAGTCAATGATGATCAAGATGCAAATGGTAATAGAATGATGCAAGCCAACCTACGTTATAGGGTTGAATGGTAG 663 0.4148 MAGKRNQTSPVGSPTSGNISDSSSKEQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFENYVGPLKVYLNNYREIEGEKSSVGRQEDYHSPITETNDGVAEINKLTHSVSTKTDFPSFNGGFYSVGSQVTPKSFTEIGGITSYRESSINRTIAESAVNDDQDANGNRMMQANLRYRVEW 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00092 220 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Gabi606g00092 220 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Gabi606g00092 220 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Gabi606g00092 220 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gabi606g00092 220 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Gabi606g00092 220 Gene3D Histone, subunit A 17 150 IPR009072 GO:0046982
Gabi606g00092 220 MobiDBLite consensus disorder prediction 1 27 - -
Gabi606g00092 220 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 17 158 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gabi606g00092 220 FunFam Nuclear transcription factor Y subunit B-3 19 143 - -
Gabi606g00092 220 SUPERFAMILY Histone-fold 27 128 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00092 Gabi-Chr606 849035 850097 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00092 21 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.321 2.48e-65 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gabi606g00092 CBFD_NFYB_HMF 2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00092 K08065 - gmx:100810059 328.176