Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00055 ATGTATGTGCCAGAGCATGTTGTGACTAAGAGCAGTTTCGTTAAGAACATAGTTGTTACATTATACTTGCAGTTTCGAGTAGTCTGCATGGGAGGCGTTAACGGCAAGTATGATAACACACGAAACCGAAACCGAAACCGAAACCGCGAAGTTGAGAGGTTGAAACGTGAAAATGAGAATTCAAACAGAGGTTCTGCAGCTAAACCAACAAGACACAAGGATTATTCAAGGACACATTCATCTAAGCATGTTGTGGAAGTTGAGGATGAGGAGACTAAGAAAAAAGTAGAAGTTAGTACTATTGGAGGAAGAGAAGGAGATGTTAGAAACGATAAGACCAGTGAGGTTGGAAATGTTTCAATGAGATCAGAGGAGAAGAAGAAGATTGCAAGCTATGAATTTGTTGATGGCTGGCCAAAATGGCTTGTTGATAATATCCCCAAAAACTTTTTGGCTAGTTTGGTTGCCAAAAGTGCTGATTCCTATGAAAAACTTGATAAGGTAGGACGTGGAACATATAGCAATGTGTACAAAGCAAGAGATAAGGAAACTGGGAAGATTGTTGCTTTGAAGAAGGTACGGTTTGATACATCAGATTCTGAAAGCATAAAGTTTATGGCAAGAGAGATCATGTTACTGCAGGCACTGGATCATCCCAATGTTATCAAACTTGAAGGATTAGCAACATCAAGGATGCAATATAGTCTTTATCTAGTTTTTGAGTACATGCAAACCGACCTTACCAGAATTATTTCCCGCCCTGGGGAAAGACTCACTGAACCACAGATAAAGTGCTATATGCAGCAGCTGCTTTTGGGGCTCCAGCATTGTCATGAGAGGGGAGTTATGCACCGAGATATTAAAGCTTCTAACTTGTTAATAGATAAAAGAGGGGTGCTAAAAATTGCAGATTTTGGGCTTGGATATTCCTTTGCTATTAGACCTGAAGGGCCTCTTACAAATCGAGTTGTGACACTTTGGTATAGAGCTCCTGAACTTCTTTTAGGCTCAACTGATTATGGATATGGCATTGATCTATGGAGTGCAGGATGCTTGTTGGCTGAGATGTTTGTTGGAAGACCAATTATGCCCGGGAGGACAGAGGTAGAACAGCTTCACATGATCTTCAAACTTTGTGGTTCACCTTCAGAGGATTTCTGGAAAAAAATGAAGCTAACAACAAGCTACCGTCCACCTCAACATTACAAAGCTAATTACGAAGAAAACTTCCAGGTTTTTCCTTCGTCTGCCCGTGGTCTCTTGATCACACTTCTTGATCTAGACGCTGACCGTCGTGGCAGTGCTGCCTCTGCTCTTGAAAGTGAATTCTTCAAATCTAGTCCATTAGCATGTGACCCTTCAGCGTTACCAGTAATCCACAAAGACGAGGATGAACGCTCACAAACTAAGAGACGCAGAAGGCGCAAGAGTTTGAAAAAGGGCAAAGTATCTCAAACAAGTACAAGCAATGTAAGCCTGTCAGGAAAGAACCAAATTGCTGAACAAAGCAGCAGAGATTTTGAAACATCAAAGGAGGAGAAGAGTATGGAACAAAGCTTGCAAGGTCAAGAAACGGGGAATAGTGGAAGCAGCAGGTCGTCACAATTTATGAGCGAAAGGAGCATGAATGCATCTATATCCCCAGTTTTCCTCTCTAGTGGGAGAAAATCCCCCAAAACTGAGGGCCATCCTAATGCTCTTAAGAACATAAAGAACTACACCCTCTTACAGGCATCTATCATTGATATCATCAATCGCAACGAAGGCGATGAATCGGGCCAGTTGCGTAGGTCCTTTTCTGCGTTGGATTTTAGGCTTGATCCAGCGAAGCTATCAAGTATCTACGGATCAAGCAAGAAGTTGGACCATGAAATGTGA 1878 0.4201 MYVPEHVVTKSSFVKNIVVTLYLQFRVVCMGGVNGKYDNTRNRNRNRNREVERLKRENENSNRGSAAKPTRHKDYSRTHSSKHVVEVEDEETKKKVEVSTIGGREGDVRNDKTSEVGNVSMRSEEKKKIASYEFVDGWPKWLVDNIPKNFLASLVAKSADSYEKLDKVGRGTYSNVYKARDKETGKIVALKKVRFDTSDSESIKFMAREIMLLQALDHPNVIKLEGLATSRMQYSLYLVFEYMQTDLTRIISRPGERLTEPQIKCYMQQLLLGLQHCHERGVMHRDIKASNLLIDKRGVLKIADFGLGYSFAIRPEGPLTNRVVTLWYRAPELLLGSTDYGYGIDLWSAGCLLAEMFVGRPIMPGRTEVEQLHMIFKLCGSPSEDFWKKMKLTTSYRPPQHYKANYEENFQVFPSSARGLLITLLDLDADRRGSAASALESEFFKSSPLACDPSALPVIHKDEDERSQTKRRRRRKSLKKGKVSQTSTSNVSLSGKNQIAEQSSRDFETSKEEKSMEQSLQGQETGNSGSSRSSQFMSERSMNASISPVFLSSGRKSPKTEGHPNALKNIKNYTLLQASIIDIINRNEGDESGQLRRSFSALDFRLDPAKLSSIYGSSKKLDHEM 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00055 625 ProSitePatterns Protein kinases ATP-binding region signature. 168 191 IPR017441 GO:0005524
Gabi606g00055 625 MobiDBLite consensus disorder prediction 54 112 - -
Gabi606g00055 625 SUPERFAMILY Protein kinase-like (PK-like) 157 450 IPR011009 -
Gabi606g00055 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 282 294 IPR008271 GO:0004672|GO:0006468
Gabi606g00055 625 Pfam Protein kinase domain 162 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi606g00055 625 CDD STKc_CDK9_like 162 444 - -
Gabi606g00055 625 FunFam probable serine/threonine-protein kinase At1g54610 149 244 - -
Gabi606g00055 625 FunFam Putative serine/threonine-protein kinase 245 482 - -
Gabi606g00055 625 MobiDBLite consensus disorder prediction 454 540 - -
Gabi606g00055 625 SMART serkin_6 162 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi606g00055 625 MobiDBLite consensus disorder prediction 519 540 - -
Gabi606g00055 625 PANTHER CELL DIVISION PROTEIN KINASE 160 449 - -
Gabi606g00055 625 MobiDBLite consensus disorder prediction 482 504 - -
Gabi606g00055 625 Gene3D Phosphorylase Kinase; domain 1 151 244 - -
Gabi606g00055 625 Gene3D Transferase(Phosphotransferase) domain 1 245 485 - -
Gabi606g00055 625 ProSiteProfiles Protein kinase domain profile. 162 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi606g00055 625 Coils Coil 37 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00055 Gabi-Chr606 526793 531855 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00055 156 482 Core Cell Cycle Gene Families AT5G10270 46.667 7.81e-101 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gabi606g00055 Pkinase 5e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00055 K08819 - gmx:102667260 783.097