Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00047 ATGATGTTTCCAGGTATGAATAGGGAGAGTGAGATGTCAGCAATGGTTTCGGCTTTGTCCCATGTTGTCGGTGGTGGTGATTATGCTGTTCATCATCAGAATATGAACCATAGTGCAATTGGAGTAGATGGTGCTGATGCTTTTACTGTTACACAAAACATGCCTTCTGGTTTTGTAACACCATCTTCATCTTATGGTGGTAGTACTTCTGCCTTCAAGAGAAGGAGAGAAGATGATAGATCCTCTGGTGATTTCTCACGTGGAGTTTCATCCCCTGCTATTCCCTCAAGTACAGTGGTAAAGTTTTCAAGCAACCGAAGCAGCACAACAAGAAGAAGAGAAACAAGCCAACTAGAAAATTCAGTATATGAATACAGAACAGAGAATATGAATAGAGAACAAAACCAACAAAAGAGAAAATACAGAGGAGTGAGACAAAGGCCATGGGGCAAGTGGGCTGCAGAGATAAGAGACCCATTCAAAGCAGCAAGAGTGTGGTTAGGAACATTTGACACAGCTGAAGCAGCAGCAAGAGCCTATGATCAAGCTTCATTGCGTTTCAGAGGCAACAAAGCTAAACTCAACTTCCCTGAAAATGTTAGGCTCAGGCAACTTTCTCTTAATCCAACATCCACCCATTTGAGCATTTCCGATTCTCAGTCCATTCCTTCTACCACTGAGCCATTAGTTCACACTGAAGCAATTCAAACTTCGCAGGGTTCCAACAATTTTTATGACTATTCACAGGTTCAAGACTACCCCTTCACCCTATATGACCAGATTATTATGTCATCTACCATGGCTTCTCATCTTCAATCTTCCTCATCTCCATCAGCTTCTTCTTCTGTGACTTCTCCGCAGGCAGCTTCAATTCCTTCCATTTATTCTACCCAGCTGCCACCATCGTCTTCTGGTTATAGCTCCTCTCCCTCTGGATGA 939 0.4292 MMFPGMNRESEMSAMVSALSHVVGGGDYAVHHQNMNHSAIGVDGADAFTVTQNMPSGFVTPSSSYGGSTSAFKRRREDDRSSGDFSRGVSSPAIPSSTVVKFSSNRSSTTRRRETSQLENSVYEYRTENMNREQNQQKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDQASLRFRGNKAKLNFPENVRLRQLSLNPTSTHLSISDSQSIPSTTEPLVHTEAIQTSQGSNNFYDYSQVQDYPFTLYDQIIMSSTMASHLQSSSSPSASSSVTSPQAASIPSIYSTQLPPSSSGYSSSPSG 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00047 312 CDD AP2 140 199 IPR001471 GO:0003700|GO:0006355
Gabi606g00047 312 SUPERFAMILY DNA-binding domain 140 198 IPR016177 GO:0003677
Gabi606g00047 312 PRINTS Ethylene responsive element binding protein signature 141 152 IPR001471 GO:0003700|GO:0006355
Gabi606g00047 312 PRINTS Ethylene responsive element binding protein signature 163 179 IPR001471 GO:0003700|GO:0006355
Gabi606g00047 312 ProSiteProfiles AP2/ERF domain profile. 140 197 IPR001471 GO:0003700|GO:0006355
Gabi606g00047 312 MobiDBLite consensus disorder prediction 272 312 - -
Gabi606g00047 312 MobiDBLite consensus disorder prediction 85 118 - -
Gabi606g00047 312 MobiDBLite consensus disorder prediction 56 118 - -
Gabi606g00047 312 Gene3D AP2/ERF domain 139 199 IPR036955 GO:0003700|GO:0006355
Gabi606g00047 312 PANTHER DNA-BINDING DOMAIN 108 272 IPR044808 GO:0003700|GO:0009873
Gabi606g00047 312 SMART rav1_2 140 203 IPR001471 GO:0003700|GO:0006355
Gabi606g00047 312 Pfam AP2 domain 140 189 IPR001471 GO:0003700|GO:0006355
Gabi606g00047 312 FunFam Ethylene-responsive transcription factor 2 139 198 - -
Gabi606g00047 312 MobiDBLite consensus disorder prediction 56 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00047 Gabi-Chr606 475932 477319 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00047 130 213 AP2-EREBP Transcription Factor Family AT2G33710 66.279 9.80e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi606g00047 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00047 - - gmx:100817546 279.641