Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00044 ATGGACTTCGACGAGTACGAGTACTTGGAGAAGACAGTGGAGGAGCAACAGGAAGATAGAGATTCCTCTAAGAAGAAAAAGGACACCAACGACAAGAGCGATAGGAGTTACAGGAAGCACGTCGACGACGATCTGGACACCGATGACCGGAGGAGCAAGAGGTCGAGGGGAGACGACGAGAATGGCTCCAAAAAGGATCGCGACAGAGACCGAGAACGAGAACGTTCCTCCGGCCGCCACAGGGAGAAGGACGGGGAGAGGAACAAAGAGAGGGATAAGGATAGAGAGAGGAGAGACAGGGATAAAGATAGGGAGAGGAGAGATAGGGATAAGGATAGGGAAAAGGAACGCGAGAGAAGAGAGAGGGAGAGAGAGAAAGAAAAGGATGAGAAAGAGAAAGAGAGATCCAGGAGAAGCATGAGCCGTTCCGAGAGAGATAGAGACAGAGAGCGAGATTTCGAAATGCGAGATGGCCGGAGATTTCGGGATAAGAAAGAGGCTGTGGAACCTGAGGCAGACCCAGAAAGGGATCAGAGAACTGTTTTTGCTTACCAGATGCCTCTAAAAGCAACGGAGAGAGATGTATATGAGTTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTTCGTCTGATCATGGATAGGAACTCAAGACGATCAAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTTGGGCAACCTGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTTGTACAGTCTAATGCTTCCAGTGGAGCTGCAGGTGTAGCAGGACCTTATGGGGCTGTGGACAGAAAATTGTATGTGGGGAATCTTCACTTCAACATGACTGAGAGTCAGCTGCGAGAGATTTTTGAGCCATTTGGTCCGGTTGAGGTTGTGCAACTGCCTCTTGACTTGGAGACAGGACACTGCAAGGGTTTTGGGTTTGTTCAATTTGCCCATCTTGAGCATGCCAAGGCAGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACCATCAAGGTTTCGTCTGTAACAGATCATGTTGGAAACCAAGATACAACTGCAAAATCTGCAGACTTTGATGACGATGAAGGTGGATTGACTTTAAATGCCCATTCAAGAGCATTGCTAATGCATAGGCTGGCTGGCTCTGACATTTCTGCAAGCATGGGTTTGCCCATTGTGAATGGGTCAGTTCCTGCACAGCAGGCTATTAGCTTGCCTATTGGTAATCCAGGTATTATACCTGCACCAGTTCTACCAACACAAGTTATGCCTACCCCAGTGGTAGAACCTGTAGGAAGCCCCAGCGAGTGTTTACTTTTGAAGAACATGTTTGATCCAAGCACCGAGACGGAACCAGATTTTGATATGGACATCAAAGAGGATGTAGAGGAAGAGTGTTCTAAGTATGGCCGGGTGAAGCATATTCATGTCGACAAAAGAAGTGCAGGTTTTGTGTATTTGCGGTTTGAAACAGTGGAAGCATCAAGTGCTGCTCAACGTGCAATGCACATGAGATGGTTTGCACGCAGGTTAATTTCGGCTGTCTTCATGCAACCGCAGATGTATGAAGCCAAGTTTAAAGGGGAAACTTGA 1638 0.4713 MDFDEYEYLEKTVEEQQEDRDSSKKKKDTNDKSDRSYRKHVDDDLDTDDRRSKRSRGDDENGSKKDRDRDRERERSSGRHREKDGERNKERDKDRERRDRDKDRERRDRDKDREKERERREREREKEKDEKEKERSRRSMSRSERDRDRERDFEMRDGRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGNQDTTAKSADFDDDEGGLTLNAHSRALLMHRLAGSDISASMGLPIVNGSVPAQQAISLPIGNPGIIPAPVLPTQVMPTPVVEPVGSPSECLLLKNMFDPSTETEPDFDMDIKEDVEEECSKYGRVKHIHVDKRSAGFVYLRFETVEASSAAQRAMHMRWFARRLISAVFMQPQMYEAKFKGET 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00044 545 Coils Coil 112 146 - -
Gabi606g00044 545 MobiDBLite consensus disorder prediction 13 177 - -
Gabi606g00044 545 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 374 469 IPR029123 -
Gabi606g00044 545 FunFam Splicing factor, CC1-like protein 446 545 - -
Gabi606g00044 545 MobiDBLite consensus disorder prediction 1 177 - -
Gabi606g00044 545 FunFam Splicing factor CC1-like 104 264 - -
Gabi606g00044 545 Gene3D - 277 373 IPR012677 -
Gabi606g00044 545 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 359 IPR000504 GO:0003723
Gabi606g00044 545 FunFam Splicing factor CC1-like 265 370 - -
Gabi606g00044 545 SUPERFAMILY RNA-binding domain, RBD 172 263 IPR035979 GO:0003676
Gabi606g00044 545 CDD RRM1_RBM39_like 180 252 - -
Gabi606g00044 545 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 248 IPR000504 GO:0003723
Gabi606g00044 545 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 474 527 IPR000504 GO:0003723
Gabi606g00044 545 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 353 IPR000504 GO:0003723
Gabi606g00044 545 CDD RRM3_RBM39_like 450 532 - -
Gabi606g00044 545 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 256 IPR000504 GO:0003723
Gabi606g00044 545 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 541 IPR006509 GO:0003723|GO:0005634|GO:0006397
Gabi606g00044 545 SMART rrm1_1 180 252 IPR000504 GO:0003723
Gabi606g00044 545 SMART rrm1_1 452 529 IPR000504 GO:0003723
Gabi606g00044 545 SMART rrm1_1 282 355 IPR000504 GO:0003723
Gabi606g00044 545 Gene3D - 108 265 IPR012677 -
Gabi606g00044 545 NCBIfam splicing factor, CC1-like family 67 541 IPR006509 GO:0003723|GO:0005634|GO:0006397
Gabi606g00044 545 Gene3D - 447 545 IPR012677 -
Gabi606g00044 545 SUPERFAMILY RNA-binding domain, RBD 447 533 IPR035979 GO:0003676
Gabi606g00044 545 Coils Coil 6 26 - -
Gabi606g00044 545 SUPERFAMILY RNA-binding domain, RBD 281 358 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00044 Gabi-Chr606 424776 432659 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00044 253 354 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 3.01e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00044 K13091 - gmx:100793461 698.738