Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00036 ATGGATTTGGAGAAGTTCCGATCCATATTGGAGAGTGCGGGCGTTGACGTTTGGGTGTTGATGGACGCCGCAATCACGGTGGCTTCCGTTGATTACGCCAACGAATTGAAGCGCCGGAGAGACGGAATCGTGGAGCGCCTTTACACGGCGTCGACTACGGCGGCTCCGTCGCGGTGTCGGAACTGCGAAGCCAATAACGGTGAAATCAAGAGGCAGAGTAGTCCCTCAACGGATAAGGAAAAGGATCCTTACGGTGGGTTGTTTGATGATGAGGAGAAGAAGATTCTAGAAATCAAAGACCAACTTGAAGACCCTCACCAGTCGGAAGATTCCTTGGTGGAGTTGCTACAGAATCTCGCAGACATGGATATTACATTCCAAGCTTTAGAGGACACTGCCATTGGGAGGCATGTGAATCGGTTGCGGAAGCATTCGTCTAATGAAGTTAAGAGATTGGTGAAGCTACTTGTCAGTAAGTGGAGGGAAACTGTAGATGAATGGGTGATGTTGGAGACACCGGGAGAACCGGCTACAGCTGTCATGGTTGATGAAGACTCGCCTCAGCAGAAAAACCCACAAAACGGGCATCATCAGATTCCTGACTTTGGGAACTCTCCAAATCTACAGAATGGGAGTTTTTGGTTAGAGCGCAACCATACCCAAGCTGAACTAAAACCAAAAGCATTTCCTCGCAAAGAAGCTCCACCAAAACCAGAGGCATCACTATCTGTCCCGACTTCTCTTGCTCCTCAAAAAAGACAGAGAGAACAAAGAGAGACCAATTTTGACTCGGAGAGACTTGCTTCAGCAAGAAGGCGGCTTCAAGAGAACTACAAAGAGGCTGCAAATGCCAAAAGGCAAAGAACGATTCAGGTGATGGACCTCCATGAGTTACCAAAACCCAAGAATGCCTTCTTTGGAAAGACCAGAGGCGGCGGGGCTGCGGTTCTCAGGGAAAGGCACCGGTGA 969 0.4923 MDLEKFRSILESAGVDVWVLMDAAITVASVDYANELKRRRDGIVERLYTASTTAAPSRCRNCEANNGEIKRQSSPSTDKEKDPYGGLFDDEEKKILEIKDQLEDPHQSEDSLVELLQNLADMDITFQALEDTAIGRHVNRLRKHSSNEVKRLVKLLVSKWRETVDEWVMLETPGEPATAVMVDEDSPQQKNPQNGHHQIPDFGNSPNLQNGSFWLERNHTQAELKPKAFPRKEAPPKPEASLSVPTSLAPQKRQREQRETNFDSERLASARRRLQENYKEAANAKRQRTIQVMDLHELPKPKNAFFGKTRGGGAAVLRERHR 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00036 322 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 314 IPR044790 -
Gabi606g00036 322 MobiDBLite consensus disorder prediction 65 86 - -
Gabi606g00036 322 CDD TFIIS_I 92 165 - -
Gabi606g00036 322 ProSiteProfiles TFIIS N-terminal domain profile. 90 167 IPR017923 -
Gabi606g00036 322 MobiDBLite consensus disorder prediction 184 212 - -
Gabi606g00036 322 Coils Coil 264 287 - -
Gabi606g00036 322 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 89 174 IPR035441 -
Gabi606g00036 322 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 92 168 IPR035441 -
Gabi606g00036 322 MobiDBLite consensus disorder prediction 226 268 - -
Gabi606g00036 322 MobiDBLite consensus disorder prediction 252 268 - -
Gabi606g00036 322 SMART TFS2_5 95 166 IPR003617 GO:0005634
Gabi606g00036 322 MobiDBLite consensus disorder prediction 301 322 - -
Gabi606g00036 322 Pfam TFIIS helical bundle-like domain 115 163 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00036 Gabi-Chr606 357610 360304 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gabi606g00036 Med26 6.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00036 - - gmx:100796457 459.914