Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00030 ATGGAACAGAAAGGAAATGTGCCTATGCAAAGATATGAACTAGGGAGATTATTCGGCCAAGGAACCTTTGCAAAGGTTTACCATGCAAGGAACCCTATAACTGGCATGAGTGTGGCCATTAAAGTTATTGATAAAGAGAAGGCTCTGAAAGTAGGGATGATTGATCAGATTAAGCGTGAAATTTCAGTGATGAGACTAATCAGCCATCCACATGTGGTTGAGCTTTATGAGGTAATGGCCAATAAAACCAAAATTTACTTTGTTATGGAGTATGTAAAAGGTGGTGAACTCTTCGCCATCCTATCGAAAGGAAAGCTCAAGCAAGATGATGCTAGGAGATATTTTCAGCAATTGATCAGTGCTGTTGACTACTGCCATAGCAGAGGTGTATGTCACTGCGATTTAAAACCAAAAAATCTTCTATTGGATGAAAATGGATATTTGAAGGTCTCAGATTTTGGGTTAAGTGCTCTTGCTGAGTCTAAGCACCAAGATGGATTACTCCATACTACATGTGGTACCCCAGCCTATGTTGCTCCAGAAGTGATTAACAGAAAGGGTTATGATGGGACCAAAGCTGATATATGGTCATGTGGGGTGATCTTGTATGTTCTATTGATTGGTTTTCTTCCATTTAGATATTCAAATCTGATGGAGATGTGTAAAGAACCTTGGGATACACCACCCCAAAAGCTAGCTCAAGGGATGGGAGTGTCCAAGACCTTATAA 729 0.4019 MEQKGNVPMQRYELGRLFGQGTFAKVYHARNPITGMSVAIKVIDKEKALKVGMIDQIKREISVMRLISHPHVVELYEVMANKTKIYFVMEYVKGGELFAILSKGKLKQDDARRYFQQLISAVDYCHSRGVCHCDLKPKNLLLDENGYLKVSDFGLSALAESKHQDGLLHTTCGTPAYVAPEVINRKGYDGTKADIWSCGVILYVLLIGFLPFRYSNLMEMCKEPWDTPPQKLAQGMGVSKTL 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00030 242 SMART serkin_6 12 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi606g00030 242 SUPERFAMILY Protein kinase-like (PK-like) 8 226 IPR011009 -
Gabi606g00030 242 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Gabi606g00030 242 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 222 - -
Gabi606g00030 242 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Gabi606g00030 242 ProSiteProfiles Protein kinase domain profile. 12 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi606g00030 242 Gene3D Transferase(Phosphotransferase) domain 1 3 236 - -
Gabi606g00030 242 PIRSF ILK 1 229 - -
Gabi606g00030 242 FunFam Maternal embryonic leucine zipper kinase 4 225 - -
Gabi606g00030 242 Pfam Protein kinase domain 12 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00030 Gabi-Chr606 303028 306067 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00030 1 223 CBL-interacting serine-threonine protein kinases AT5G45820 77.578 4.26e-125 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi606g00030 Pkinase 6.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00030 K07198 - gmx:100815651 402.519