Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00024 ATGTATGCTTCTACTTCCTTTACTTCACAGATCGTCCATGACCTTCTTGTGGACTCACACTCAAGAAGGTTACTACTTCCAAACTCACTTCACCAATCAGCCAACGCCCCAGCAGCTTCCACAAACAGCCACAATTCAACGAGTTTTTACCTCGGAGATCGTGAATTCGATGCAAACGTTGTCATGATACTCTCAGTCCTATTATGTGCTGTTATTTGCTCACTTGGGTTGAACTCGATCATAAGGTGTGCCTTAAGGTGTTCAAATATAGTCATCAATGACGACTCTTCAAGTGCTAGCAATAATAACCCTTCACCAAGATTGGCCAACACAGGAATCAAGAAGAAAGCTCTCAAGTCTTTCCCTACCGTAAGTTACTCATCGGAGTTAAAGCTTCCAGGTTTGGACACAGAGTGTGTGATATGCCTCTCAGAGTTCACCAGTGGTGAACGTGTTCGCATATTGCCAAAGTGCAACCATGGTTTCCACGTCCGTTGCATTGACAAATGGCTAAGTTCACACTCATCTTGCCCTAAGTGTAGACAGTGTCTCATTGAGACTCGAAAGATTGTTGGATCTAAACCACGTGTGTTGCCAGTGCAAGAAACCATTATAAGGATCGAACCACTAGAACCAGAAGGTTTGGAGCGTAACTATAGGGAAGTATAA 669 0.4365 MYASTSFTSQIVHDLLVDSHSRRLLLPNSLHQSANAPAASTNSHNSTSFYLGDREFDANVVMILSVLLCAVICSLGLNSIIRCALRCSNIVINDDSSSASNNNPSPRLANTGIKKKALKSFPTVSYSSELKLPGLDTECVICLSEFTSGERVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETRKIVGSKPRVLPVQETIIRIEPLEPEGLERNYREV 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00024 222 CDD RING-H2_EL5-like 138 181 - -
Gabi606g00024 222 SMART ring_2 139 180 IPR001841 -
Gabi606g00024 222 FunFam RING-H2 finger protein ATL73 98 186 - -
Gabi606g00024 222 Pfam Ring finger domain 138 181 IPR001841 -
Gabi606g00024 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 185 IPR013083 -
Gabi606g00024 222 PANTHER RING-H2 FINGER PROTEIN ATL78 17 214 IPR044602 GO:0016567|GO:0016740
Gabi606g00024 222 SUPERFAMILY RING/U-box 117 187 - -
Gabi606g00024 222 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00024 Gabi-Chr606 261696 262364 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00024 30 185 C3H Transcription Factor Family AT3G10910 52.830 4.82e-47 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00024 K19040 - gmx:100527126 321.627