Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00022 ATGAGTAGTACTGTGATGGATGATTATGAGCAATTTAACAACACATTTAGCCCTCCCTACGTGAATGAAGTCCATGAGTGTAACTTAGAAAATGAATTTCCATTCCAGGAAGAAGATCTCTTATCTCCAAATACCATCATGGATGAAATTTTTGATCAAGAGTCAGTTGAAGAATTGCTGCAGCAACATACAGAGAACCAGGACATTGATTTCATGATTAATCATGATGAGACAATGGGTCTAGGCTCTGAATTATGTCATGGAGTGACCCCGAAAGCACATGAAAGCGTGCATGTTTCAATGGAAGGCGATTCATATTTGAAGGGAATTCAAGCAGAGCTAATGGAAGAGACAAGTTTAGATGATCTGTTGCTGACAGGAGCTGAAGCTGTTGAAGCACAGAACTGGGATCTTGCTTCTGACATAATTGAGAAACTTAACAATTCCTTATCTTTAGAAAATGGGGATAGTTTATTAAACAGGTTGGCTCTTTTCTTTACTCAGGGTTTGTATTATAAAACTATAAATGCTCCTGAGTTGCAGCTTGATCCTGTTTCTACACAGACAAACACTTTCTGTGTGTTTCAGATACTACAAGAACTCTCTCCCTATGTAAAATTTGCTCATTTCACAGCCAACCAAGCAATCTTTGAAGCCACAGAAGGTGCTGAGGATGTTCATGTCATTGATTTTGACATCATGGAGGGGATTCAATGGCCACCGTTGATGGTTGACCTTGCAATGAGAAAGGGTACTTCCCTTAGAGTAACAGCCATCACAGTGAACCAACAAAGTGCAGCTTCTGTTCAACAAACAGGAAGAAGGCTTAAAGAGTTCGCGGATTCTATCAATTTTCCATTCATATTCGATCAGATAATGATGGTGGGGGAAGAAGATTTTCAAAGAATTGAACTTGGTCATCATGCACTTATAATCAACTGTATGATACACCAGTGGATGCCAAACAGGAGTTTCTCATTGGTAAAAACTTTTCTTGATGGTGCAAGCAAATTATCACCTAGGCTTGTTGTTTTAGTGGAAGAAGAACTTTTTAACTTTTCTAAACTCAAATCCATGTCCTTCGTGGATTTCTTCTGTGAGGCTTTGTATCACTACACTGCACTTTCTGATTCAATTGCCAGTAGTTTGTGGGGTAGTCACAAGATGGAGTTAACCCTGATAGAAAAAGAGATTCTGGGGCTCAGGATTATAGACAGTGTAAGGCAGTTTCCTTGTGAAAGAGAGGAGAGAATGTTGTGGGAAGAAGGATTCTATTCCTTGAAGGGGTTTAAACGTGTTCCTATGAGTACATATAATATTTCACAAGCCAAGTACTTGGTGAGCCTGTTTGGTGGAGGGTATTGGGTGCAATTTGACAAGTGTAGATTGGCTTTGTGTTGGAAGTCAAGGCCTTTGACTGCTGCTTCAATCTGGGTACCAACAGCTTCTCTCAGTTACAAGGTCAAATAG 1470 0.398 MSSTVMDDYEQFNNTFSPPYVNEVHECNLENEFPFQEEDLLSPNTIMDEIFDQESVEELLQQHTENQDIDFMINHDETMGLGSELCHGVTPKAHESVHVSMEGDSYLKGIQAELMEETSLDDLLLTGAEAVEAQNWDLASDIIEKLNNSLSLENGDSLLNRLALFFTQGLYYKTINAPELQLDPVSTQTNTFCVFQILQELSPYVKFAHFTANQAIFEATEGAEDVHVIDFDIMEGIQWPPLMVDLAMRKGTSLRVTAITVNQQSAASVQQTGRRLKEFADSINFPFIFDQIMMVGEEDFQRIELGHHALIINCMIHQWMPNRSFSLVKTFLDGASKLSPRLVVLVEEELFNFSKLKSMSFVDFFCEALYHYTALSDSIASSLWGSHKMELTLIEKEILGLRIIDSVRQFPCEREERMLWEEGFYSLKGFKRVPMSTYNISQAKYLVSLFGGGYWVQFDKCRLALCWKSRPLTAASIWVPTASLSYKVK 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00022 489 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 103 474 IPR005202 -
Gabi606g00022 489 ProSiteProfiles GRAS family profile. 111 479 IPR005202 -
Gabi606g00022 489 Pfam GRAS domain family 121 478 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00022 Gabi-Chr606 216685 218154 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00022 123 478 GRAS Transcription Factor Family AT5G41920 32.791 3.93e-41 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gabi606g00022 GRAS 1.1e-76 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00022 - - gmx:100804613 752.666