Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00019 ATGAGTTTGGCGGGTACAGAAAGCTCAGAAGAGGGTGCAGGGCATATGGAGCCTCCCGATCCTGATGTTCTTGAAATTGATCCTACTGGTCGCTACAGCAAGTATAAAGAAGTGGTCGGCAAAGGAGCCTTCAAAACTGTTTACAAGGCTTTTGATGAAGTCAATGGAATTGAAGTTGCATGGGGCCAGGTTCAGATTGATGAGGTGTTACAGTCACCAGGTGACTTAGAGAGGCTTTACTCAGAAGTGCATCTCTTGAAATCTCTGAGGCACGATAACATTGTAAGATTCTACAATTCCTGGATTGATGAGAAGCGCAAGACTGTTAATGTGATTACAGAGTTGTTTACCTCGGGTAGCCTCAAACAGTATCGGAAAAAGCACAAGAAGGTTGACATGAAGGCTGTTAAAGGATGGGCAAGACAGATTTTAATTGGTTTAAGCTATCTCCACAGTCACACACCACCGGTTATACATAGGGACCTGAAATGTGATAATATATTTATCAATGGTCACCAAGGAGAAGTTAAAATTGGAGATCTGGGACTGGCAACTTTCTTGGAGCGTACTAATGCCAAGAGTGTACTTGGAACCCCGGAGTTTATGGCACCTGAGCTGTATGATGAAAATTACAATGAATTAGCAGACATATATTCGTTTGGTATGTGCATGCTTGAGTTGGTGACTTCTGAGTATCCTTACAGTGAATGCAGAAACTCGGCACAGATATACAAGAAAGTTTCATCCGGTATAAAACCTGTTGCTCTTTCTAAAGTGATAGATCCGGAAGTAAAATCATTTATTGAGAAATGTCTTGTCCCAGCATCTCAAAGATTATCAGCAAAGGAACTTCTGTCGGACCCCTTTCTCCAAGTGAATGGTTTGACAAAGAATCGCCCTTTTCCGTTGCCTGATATTGTTCTTCCCAAATTGGGAGCCTTTGAAAGCCGATGCATGATGTCAGAAGGTCCTGCTAGTGCACGTAATGGAGCCATTATGGATCTTGGGGAAACCGGTGAGCTACCTGTGATCACTGTATTTGATAGTTCTGCTGAGGGTGCATCGTCTTCTCCATGTGTTGAGATAAGAAGGTTGAAGAGAGGTGATATGTTCTTTCTAAAAGGAGAAGAAAATGATGAGAATTCTGTATCATTAGTTCTACGGATAGCTGATCAGAGTGGACGAGCAAGAAATATCCATTTCATATTCTACCTTGACAGTGATACTGCTGTCTCAGTTTCAAGTGAAATGGTTGAGCAGCTGGAACTTGCTGATCACAATGTTAAATTCATAGCTGAGTTGATAGATTTGTTATTGACAAATTTAGTTCCTGATTGGAAACCTTGTGTAGTAATTGATCATTTGGTTTCTCCAAATGGTAAATTGACTCAAGCGAGCCAACAGAGAGACTTGGAGTTGGCAAAATACAAAGGAAACTCAAAACATTCTACCGAAATTGTGGCTGAAGATGTACGTCCCTCAACGTCATATCGAAGATCAGCTACAAAAGAAAACCATGATAATATTGATTTTGATGAGGTTTTATCACATGAATGGATTGGTCTTTCAAAAGCAACAAAGGCAGATGATTTGTGTTCTGAGATATCATATGCTTCTGCAACAACATCTGACTTCAATGATAAGTTTTCATTCATCTCTGCTGAATCAGGATTTGATAGAGGTAGTCAATCCTCATTTGCATCTGAAATTGAGGCATCGCCTGATTACAGGAGTAAGTCTTCAGACCTGGGAAGCAACGGCATCATGAGCTTCTCTAGTTATCCCAGTGGTGTTTCCTCCTTGTCTGAAGCTGACGATGAGTTGAGAATAGAATTAGAAATGATTGAACAGAAGTATCAAGAGGCCATCAAAGAATTATCCAAAAAAAGAAACCAGGCCATCATGGAGATTAGAAGGAGAATGTCAGACAAGATTATCATAGAATAA 1947 0.4058 MSLAGTESSEEGAGHMEPPDPDVLEIDPTGRYSKYKEVVGKGAFKTVYKAFDEVNGIEVAWGQVQIDEVLQSPGDLERLYSEVHLLKSLRHDNIVRFYNSWIDEKRKTVNVITELFTSGSLKQYRKKHKKVDMKAVKGWARQILIGLSYLHSHTPPVIHRDLKCDNIFINGHQGEVKIGDLGLATFLERTNAKSVLGTPEFMAPELYDENYNELADIYSFGMCMLELVTSEYPYSECRNSAQIYKKVSSGIKPVALSKVIDPEVKSFIEKCLVPASQRLSAKELLSDPFLQVNGLTKNRPFPLPDIVLPKLGAFESRCMMSEGPASARNGAIMDLGETGELPVITVFDSSAEGASSSPCVEIRRLKRGDMFFLKGEENDENSVSLVLRIADQSGRARNIHFIFYLDSDTAVSVSSEMVEQLELADHNVKFIAELIDLLLTNLVPDWKPCVVIDHLVSPNGKLTQASQQRDLELAKYKGNSKHSTEIVAEDVRPSTSYRRSATKENHDNIDFDEVLSHEWIGLSKATKADDLCSEISYASATTSDFNDKFSFISAESGFDRGSQSSFASEIEASPDYRSKSSDLGSNGIMSFSSYPSGVSSLSEADDELRIELEMIEQKYQEAIKELSKKRNQAIMEIRRRMSDKIIIE 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00019 648 Pfam Protein kinase domain 36 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi606g00019 648 Gene3D Phosphorylase Kinase; domain 1 18 114 - -
Gabi606g00019 648 Gene3D Transferase(Phosphotransferase) domain 1 116 296 - -
Gabi606g00019 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Gabi606g00019 648 SUPERFAMILY Protein kinase-like (PK-like) 35 322 IPR011009 -
Gabi606g00019 648 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 19 641 - -
Gabi606g00019 648 SMART serkin_6 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi606g00019 648 ProSiteProfiles Protein kinase domain profile. 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi606g00019 648 Gene3D - 381 458 - -
Gabi606g00019 648 FunFam Probable serine/threonine-protein kinase WNK1 18 114 - -
Gabi606g00019 648 FunFam probable serine/threonine-protein kinase WNK9 116 295 - -
Gabi606g00019 648 FunFam Serine/threonine-protein kinase WNK8 381 477 - -
Gabi606g00019 648 MobiDBLite consensus disorder prediction 13 27 - -
Gabi606g00019 648 MobiDBLite consensus disorder prediction 1 27 - -
Gabi606g00019 648 Coils Coil 598 636 - -
Gabi606g00019 648 CDD STKc_WNK 31 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00019 Gabi-Chr606 195966 199516 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00019 133 458 MAP Kinase Kinase Kinase AT1G49160 71.254 1.04e-173 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Gabi606g00019 Pkinase 1.9e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00019 K08867 - gmx:121175054 895.575