Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00016 ATGGTTAGAGACGATCTTTACATAACGGTTCCCAGCTTATTCCGATGCCCAATATCACTCGACGTGATGAAATCCCCTGTGAGCCTCTGCACAGGCGTAACCTACGACCGTTCCAGCATCCAACGCTGGCTCGACAACGGCAACAACACCTGCCCCGCCACCATGCAGGTCCTCCACAGCAAGGATTTCGTTCCTAACCGCACCTTACAGAGGCTTATCCAGATCTGGTCCGACTCGGTCCGCCACCGAGTCGACTCGCCCGAGTCCCCCGCCTCTACCGAATCGGCCCCTTCCAAGGACCAAATCCTCCTCGCCATCACCGACTTGGAGTCAAGTGGCGAGAACCGCTTCGACTCGCTCGCGAAAATCGTACGTTTCGCCCAAGATTCCGAAGAGAACCGTGATTTCCTCGCGAGAAAGAAATGTCTCGTGCCCGTGCTGGTAGGTTTCCTCCACAATGTCAATGACGGAGCTAAACGGAGCGTCGAATTCCTGGAACAGGTTGTGAAGGCGTTGGATTTGGTTCTTTGTAAAACGGAAGATCGCGAGGGGTTGAAAAACTCGATCCTGAAGGGACAGGGACATGGACATGGACATGGACAGAGCATAGATTCTGTTCTTCTTGTTCTGCAACAAGGAAGCTGTGATTCAAGGATTGCATCGGCTAGGGTTTTGGAATCCATCGCCATAGACGCAGAATCGAAGCTGTTGATAGCGGAAAAGGAAGGCCTGGTATCGGAATTGCTCAATCAAATAACACCGGAGAAAGATCCGGCGCTAATCGAGAGCAGCTTGTCGTGCTTGGTTGCAATTTCGACGCCGAAAAGGAACAAAACGAAGCTAGTCCATCTCGGAGCCATCAAGGTCTTCTCGAACCTTCTTTCGGCGTCGAATTTGAGCGTTTCGGTGACGGAGAAGGTGCTGAAGCTGCTTGAAACGATGTCGTCGACGAAGGAAGGGAGAACGGAGATATGCGAGGAACCGGAGTGCGTGCCGGCGATACTGAAGAAGGTTCTGAAGGTATCGAGCTCGGCGACAGAGCACGCGGTGACGACGTTGTGGAGTGTGTGTTATCTTTTTCGAGATCAGAAGGCACAAGAAGCGGTCACAAAGGCCAATGGCTTGACGAAGATTCTGCTTCTGATGCAGAGCAATTGTTCCCCCACAGTGCGCCAAATGTCTTTAGATTTGCTTAAGATCTTCAGGGTTAACTCTAAGTCGTGTCTTTCTTCCTATGACACCAAAACCACCCATATCATGCCCTTCTGA 1269 0.5169 MVRDDLYITVPSLFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHSKDFVPNRTLQRLIQIWSDSVRHRVDSPESPASTESAPSKDQILLAITDLESSGENRFDSLAKIVRFAQDSEENRDFLARKKCLVPVLVGFLHNVNDGAKRSVEFLEQVVKALDLVLCKTEDREGLKNSILKGQGHGHGHGQSIDSVLLVLQQGSCDSRIASARVLESIAIDAESKLLIAEKEGLVSELLNQITPEKDPALIESSLSCLVAISTPKRNKTKLVHLGAIKVFSNLLSASNLSVSVTEKVLKLLETMSSTKEGRTEICEEPECVPAILKKVLKVSSSATEHAVTTLWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPTVRQMSLDLLKIFRVNSKSCLSSYDTKTTHIMPF 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00016 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 87 IPR013083 -
Gabi606g00016 422 PANTHER WDSAM1 PROTEIN 9 410 IPR045185 GO:0061630
Gabi606g00016 422 SUPERFAMILY RING/U-box 5 79 - -
Gabi606g00016 422 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Gabi606g00016 422 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Gabi606g00016 422 CDD RING-Ubox_PUB 11 63 IPR045210 -
Gabi606g00016 422 SUPERFAMILY ARM repeat 120 408 IPR016024 -
Gabi606g00016 422 Gene3D - 102 417 IPR011989 -
Gabi606g00016 422 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Gabi606g00016 422 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00016 Gabi-Chr606 154245 155607 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00016 1 422 U-box Gene Family AT5G64660 56.813 4.38e-152 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00016 - - gmx:100799627 632.098