Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00006 ATGAGTGGAAGTGGCAGAAAGCACTATTCAAAGTGGGATTCAAGAGATGAACCTCAATTTGCACCTGATCGTTTTCCTAGTAACAATAGTTCAAAGTGCTCCTATTTGGAAAGAAATGATAAGTTAAAACCAAGAATGGGATTTTCATGGAAGGAACCTTTCTCTGGAGGCAGAGGTTCAAATAAGGATGATATTACGAATAAAGACTACGGAGATTTGGATGCAACAATTGCATGGGACACCGATGGAAGTTATGACATGAAAATGTCTCCGGGGTTTGAGGAATGGAAAAATAAGAAGCATAGTCAATCCCCAGTCAGGAGTAGTCGGAGCAGGAGCCAAAGCCGAAGCCCTCCACGTGGTTTTAGGTGGGATTCAGGAGTCACCAACAGAAATAGAACGAGGGCTGGAGGATTGACACAACCATGTAGAGATTTTGCTGCGGGGAAATGCAGAAGAGGCAGCCATTGCCATTTCCTTCACCATGATAATCAAAACTATGAGGATAGCTGGGCAAATAGAAACAGGCAAGATGGAGGTCCCAGATATTCTGCTCTCCATGAGAGTGGGGACTATTCTCTTATTAGTGGAAGATCTAATGAAGCTTGTATTTATTTTGCAAAAGGAAGGTGTAGAATGGGAGCATCATGCAAGTATGTGCATCATGATAATTCTGATGGGTTCGGTGAAGTTTCTGTGCATGAATCAACTAGAGAAAGGGAAATTGATAGAAGGAGCACAGAGAATTCTTTCGAGCAGGGTAGTCGGCATGGTCCGAGCCACAGTGGTGATACTCCTTGCAAATTTTTTGCTTTTGGGAATTGCCGTAATGGTAAAAATTGTAGGTTTTCTCATGATAAACAAGCCCATAGGAGCCCTAATAGAAGATTAAAGGATGATAGGTCAAGGAGTAATAAAGGTGGAGATCTGGCATTGAATAGACCAAAATTGAGTGATTCAATTAGTCCTAATGGAAGGCTAAGAGATGATAGATGGGGTTCAGATGACAGTTTGGCTGATGTAGATAAAGTTTGGGACGGTCCAAAGCAGAATGATTTATTTGCTGTATCTGATAGAGCAAAGCTGTCCGAGGACAAAAAAGATGGAATTATGGCCGCCTCAGAACCTGGATTCACTGCTTGGCCAATCAGTGTTGGATTGGACCGTAGCTTAGATAAGAAGAGAGTGCATGGTGAATCACCATTTTCAAGTGATAAGAAGGAAGCCAACTGTTGGACAGTTGAAAATGCTAGTGCCAACATTCACATTTCCCGGTCAGTAGGTGCAGACATTTGGCCTGGTGATGAAAAAATGTCTCCCGATTGGAATTATGGTGTGGGATCTTCCAGCCATACTGAAGAAGAGCATGGGCAGAATAAGCAACAAGTTGCTCCAGGACAAGGATTTAATCAGAATGTAAATGCTTCGTATTCTTCAAACTATCATGCAGTTGGACAAAGTCAACTGCCAGTTTCCATCGTTCCTCTGAGAGTAGGAATTGTTGAAGGTTTGCAGAACCAGGAATTCTCTGAGAAAAAGTACGTCGAGCCAAATATCATGGATGCAAGCCTATCACAAGTTGGTTCAAGAAATCCTCCAACTCAGAAGATGGCGAGCAAAGAACAAGTTGCTCAATTTACCAGCCTATCAGCCTCTCTGACGCATATCCTTGGGACGGGTCAGCAGCTCCCACAACTTTGTGCTACTTTAAATTCTCATGATGCAAAGGATACTCCCTTCCTAGGCAAAACTGAAGGGTCTGCTAAGCCTGTTTCCATAACATCCATCAAGCCAGATCCTGCTGTTCGATTCCAAAAGCAGTATGATCCAATGTGCGACAGTCTTGAGCCTAAGAATGCTAATACAAGTGGGGTCCCCCCATCCTTTTCTCCAATTAATAAAAATCCAAAAGATGTAGTAGAAATTCCATCACTGTTATCTAAGCCAGGACAACATTTTGATGATTCTTGCAAGACTTCCTTTTCAGAAGAACAACTTGCCAAGAATGAACATTTAATTCAGTTGCAGCAAGGTGAAAGAATTGAGGTTCATAAGGAGAACAATGAAGTGGTAGCTGAACAAAAGCAAAGTTTTCCATGTGAAAATAAAATCACAAAAGAGAATGGCCCTTTGGAAAACATGGACCTAAATGGTGGACCTGATGAGGCCAAGAAAATAAAGGATGTGAAGGGGATTCGTGCATTTAAATTTTCATTGGTGGAGTTCGTTAAGGAGCTTCTGAAACCTGCATGGAAAGAAGGTCAAATCACCAAAGAAGATTATAAAGAAATTGTTAAGAAAGTTACTGATAAAGTAGTTAGTACAATGCAACGGGTACATATTCCTCAGACACAGGAGAAAATTGACCGCTACTTATCAATTTCCAAACCAAAACTTAACAAACTTGTACAGGCATATGTGGACAAGGTTCAGAAGCCTTAG 2442 0.4156 MSGSGRKHYSKWDSRDEPQFAPDRFPSNNSSKCSYLERNDKLKPRMGFSWKEPFSGGRGSNKDDITNKDYGDLDATIAWDTDGSYDMKMSPGFEEWKNKKHSQSPVRSSRSRSQSRSPPRGFRWDSGVTNRNRTRAGGLTQPCRDFAAGKCRRGSHCHFLHHDNQNYEDSWANRNRQDGGPRYSALHESGDYSLISGRSNEACIYFAKGRCRMGASCKYVHHDNSDGFGEVSVHESTREREIDRRSTENSFEQGSRHGPSHSGDTPCKFFAFGNCRNGKNCRFSHDKQAHRSPNRRLKDDRSRSNKGGDLALNRPKLSDSISPNGRLRDDRWGSDDSLADVDKVWDGPKQNDLFAVSDRAKLSEDKKDGIMAASEPGFTAWPISVGLDRSLDKKRVHGESPFSSDKKEANCWTVENASANIHISRSVGADIWPGDEKMSPDWNYGVGSSSHTEEEHGQNKQQVAPGQGFNQNVNASYSSNYHAVGQSQLPVSIVPLRVGIVEGLQNQEFSEKKYVEPNIMDASLSQVGSRNPPTQKMASKEQVAQFTSLSASLTHILGTGQQLPQLCATLNSHDAKDTPFLGKTEGSAKPVSITSIKPDPAVRFQKQYDPMCDSLEPKNANTSGVPPSFSPINKNPKDVVEIPSLLSKPGQHFDDSCKTSFSEEQLAKNEHLIQLQQGERIEVHKENNEVVAEQKQSFPCENKITKENGPLENMDLNGGPDEAKKIKDVKGIRAFKFSLVEFVKELLKPAWKEGQITKEDYKEIVKKVTDKVVSTMQRVHIPQTQEKIDRYLSISKPKLNKLVQAYVDKVQKP 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00006 813 MobiDBLite consensus disorder prediction 1 69 - -
Gabi606g00006 813 MobiDBLite consensus disorder prediction 283 307 - -
Gabi606g00006 813 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 162 IPR000571 GO:0046872
Gabi606g00006 813 ProSiteProfiles Zinc finger C3H1-type profile. 197 224 IPR000571 GO:0046872
Gabi606g00006 813 ProSiteProfiles Zinc finger C3H1-type profile. 137 164 IPR000571 GO:0046872
Gabi606g00006 813 MobiDBLite consensus disorder prediction 94 138 - -
Gabi606g00006 813 MobiDBLite consensus disorder prediction 228 263 - -
Gabi606g00006 813 MobiDBLite consensus disorder prediction 228 251 - -
Gabi606g00006 813 Pfam RNA-binding, Nab2-type zinc finger 202 221 - -
Gabi606g00006 813 SUPERFAMILY CCCH zinc finger 264 286 IPR036855 GO:0046872
Gabi606g00006 813 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 812 - -
Gabi606g00006 813 MobiDBLite consensus disorder prediction 283 333 - -
Gabi606g00006 813 ProSiteProfiles Zinc finger C3H1-type profile. 262 288 IPR000571 GO:0046872
Gabi606g00006 813 MobiDBLite consensus disorder prediction 444 472 - -
Gabi606g00006 813 SUPERFAMILY CCCH zinc finger 198 222 IPR036855 GO:0046872
Gabi606g00006 813 SMART c3hfinal6 137 163 IPR000571 GO:0046872
Gabi606g00006 813 SMART c3hfinal6 261 287 IPR000571 GO:0046872
Gabi606g00006 813 SMART c3hfinal6 198 223 IPR000571 GO:0046872
Gabi606g00006 813 Gene3D - 139 227 - -
Gabi606g00006 813 Gene3D - 228 299 - -
Gabi606g00006 813 Pfam CCCH-type zinc finger 266 286 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00006 Gabi-Chr606 51235 56789 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi606g00006 zf-CCCH 0.00022 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00006 - K22909 gmx:100783856 1022.69