Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00004 ATGTATACCAACCAGAATACTAGTGCATTCCCAAATGTTAACAACACTTGGAATGTTGAAAAGATGGAAACAAATGAACATGACCATATTATTCACCAAATCCCTAATATTGGTTCTGGAATTTGGCCCAACAGCTACCACCACCTCCTTCAAATGCATCAAATACCATCCTCATCCACCACATCATCAACCACCATGGCACCTTCCTCATCAGGTTTTCTCAGTGACATACTAGGTGTTCACATAGAAGAAGATGAGGAACCAGAAGAAGAGTTAGGAGCCATGAAGGAGATGATGTACAAGATCGCTGCTATGCAACCAGTGGATATTGACCCTGCCACCATCAGAAAGCCAAAGAGGCGAAACGTTCGCATCAGTGACGACCCACAAAGTGTTGCAGCACGCCATAGAAGAGAGAGGATCAGTGAGAAAATACGCATCCTTCAAAGACTTGTCCCTGGTGGAACCAAAATGGACACAGCTTCCATGCTAGATGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGGCAAATCAGGTTGCTTCAATCCACTCCTCAAACTCAACACCAACACCAACACCTTCCACAACCACCACAATGCATTGCTGCTGCTGCTACTACTACTCCTAGCACATTACTTTTAGCCCCGGGTTGTGATTGGCCTTTTGCACCAAATATATTACTAAGTTCTGCAACAACCGCCGCCGCTGCCACCACCGCCTCCTCCTCCATGGACATGCCGGCCGAATTGGGATTCGACGCCGGAGTCCATGGCCATGCTTGTGATGGCTCCTCCAGCTTTAATCGTCATGAGGTAATAAGTGAATAA 828 0.4638 MYTNQNTSAFPNVNNTWNVEKMETNEHDHIIHQIPNIGSGIWPNSYHHLLQMHQIPSSSTTSSTTMAPSSSGFLSDILGVHIEEDEEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSTPQTQHQHQHLPQPPQCIAAAATTTPSTLLLAPGCDWPFAPNILLSSATTAAAATTASSSMDMPAELGFDAGVHGHACDGSSSFNRHEVISE 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00004 275 FunFam BHLH transcription factor 128 192 - -
Gabi606g00004 275 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 33 199 IPR045843 GO:0003700|GO:0006355
Gabi606g00004 275 CDD bHLH_AtIND_like 126 183 - -
Gabi606g00004 275 SMART finulus 131 180 IPR011598 GO:0046983
Gabi606g00004 275 Pfam Helix-loop-helix DNA-binding domain 135 174 IPR011598 GO:0046983
Gabi606g00004 275 Gene3D - 128 195 IPR036638 GO:0046983
Gabi606g00004 275 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Gabi606g00004 275 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 193 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00004 Gabi-Chr606 27317 28144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00004 92 208 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 80.342 2.32e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi606g00004 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00004 - - gmx:100775296 359.762