Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi603g00007 ATGGATAGAGATATGGTACCTCACAGCGTTCCCTGGATGGAACCCCAACCGGAAGATGAACACTTAGCAATAGAAACATGGACAAGAACCAACAACAACGTTGGTGACCCCAAAAATGATAACATTACCGGCATGGGTATGCTGGATGGTGACTGGTACATGAACTCAGATATGAACCCACATCACCATGAGCTTCACCAAACCACAAGAGACATTGGTTTCTCTTCAGACCCAAATGATGGTTTTCTGATTCAGCAACCTTTGGATTCACCTTCTTGTGCACCTTCCTCCTTCACTCTCGACCCATCATCACAGACACATTCTTCACAACCCTTTTTACCACCGCCCAAGTCTTGCTTCTCTTCTTTCTTCGGTGTTAATGGCATCAACCCTTTTCACAATGGCTTCGACTTGGGTTCCCACAGTGGTTTCCTCGCTCCTTTTCAAGGGAACCATGCTTCCAATTCCCCTGTTTTGATGGGTTTCTCGCCCCAAATGGGCACCCTCGAGCTGAGTTCGAATAACGAGTTTCCGGTGACTCGTGGGGTCGAACTCAGTTGCGGGTTTGCCCCAATGGGTGTTGAAGAACAACAACAAGAACAAGCTTTTGATGGTTCTGGTTCTTCAAATGCACTCTTTTCGGACAAGGCCAATGTTTTGAGGTCTATTGAGGGTCTTCCTCCGGCGGCTGCTCCACCCACTTTGTTTCAAAAGCGGGCGGCGCTCCGGCAAGGTTCCTCCGTGGATAAGTTGGGAGAGTTGGAGGTTTCGGCGACCCGGTTCGCGGGTTGTTGGACGGGGTTGGAGGACTTGGAGGGGAAGGGGAAGAAAGCAGAAGAGGGGGAACTTGAGGAAGGGTTGAATTATGACTCTGATGAGGTTGTCGAGATTGGAAAGTTGGACGAGAATGGGAGTAATGTGGGCAACGATTTTAATGCCAATAACAATAGTAATAATGGTGTCACTATTGGAGACCAGAAGGGGAAGAAGAAGGGGATGCCAGCTAAGAATCTCATGGCTGAGAGGCGGCGTAGGAAGAAACTCAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCAAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCAATTGACTACTTGAAGGAGTTACTACAGCGAATTAATGATCTTCATAATGAGCTAGAATCGACCCCACCTGGCTCATCGCTGCCACCTTCCACAAGCTTTCACCCTATGACACCCACTCCATTAACCCTTCCATGTCGGGTGAAGGAAGAACTATGTCCTAGCTCTGCGCAAAGCCCTAAAAACCAATCAGCGAAGGTGGAGGTTAAGGTAAGGGAAGGAAGAGCTGTCAATATCCATATGTTTTGTGCCCGCAGACCAGGTCTTTTACTTTCCACCACGAGGGCATTGGATAACCTCGGATTGGACGTCCAGCAAGCTGTTATCAGCTGTTTCAATGGTTTCGCGTTAGATGTTTTCAGAGCTGAGCAATGCAAAGAAGGGCAGGATGTACCCCCTGAGCAAATTAAAGCAGTACTGTTGGATATAGCTGGTTACCATGGTATGATGTGA 1572 0.4796 MDRDMVPHSVPWMEPQPEDEHLAIETWTRTNNNVGDPKNDNITGMGMLDGDWYMNSDMNPHHHELHQTTRDIGFSSDPNDGFLIQQPLDSPSCAPSSFTLDPSSQTHSSQPFLPPPKSCFSSFFGVNGINPFHNGFDLGSHSGFLAPFQGNHASNSPVLMGFSPQMGTLELSSNNEFPVTRGVELSCGFAPMGVEEQQQEQAFDGSGSSNALFSDKANVLRSIEGLPPAAAPPTLFQKRAALRQGSSVDKLGELEVSATRFAGCWTGLEDLEGKGKKAEEGELEEGLNYDSDEVVEIGKLDENGSNVGNDFNANNNSNNGVTIGDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSSLPPSTSFHPMTPTPLTLPCRVKEELCPSSAQSPKNQSAKVEVKVREGRAVNIHMFCARRPGLLLSTTRALDNLGLDVQQAVISCFNGFALDVFRAEQCKEGQDVPPEQIKAVLLDIAGYHGMM 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi603g00007 523 Coils Coil 375 395 - -
Gabi603g00007 523 SMART finulus 338 387 IPR011598 GO:0046983
Gabi603g00007 523 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 202 519 - -
Gabi603g00007 523 MobiDBLite consensus disorder prediction 93 112 - -
Gabi603g00007 523 CDD bHLH_AtAMS_like 335 406 - -
Gabi603g00007 523 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 335 402 IPR036638 GO:0046983
Gabi603g00007 523 MobiDBLite consensus disorder prediction 308 334 - -
Gabi603g00007 523 CDD ACT_UUR-ACR-like 452 512 - -
Gabi603g00007 523 MobiDBLite consensus disorder prediction 308 324 - -
Gabi603g00007 523 Gene3D - 326 395 IPR036638 GO:0046983
Gabi603g00007 523 FunFam BHLH transcription factor 328 396 - -
Gabi603g00007 523 MobiDBLite consensus disorder prediction 390 414 - -
Gabi603g00007 523 MobiDBLite consensus disorder prediction 390 412 - -
Gabi603g00007 523 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 332 381 IPR011598 GO:0046983
Gabi603g00007 523 Pfam Helix-loop-helix DNA-binding domain 339 381 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi603g00007 Gabi-Chr603 162592 167699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi603g00007 47 496 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 52.331 1.56e-129 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi603g00007 HLH 2.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi603g00007 - - vvi:100265294 558.91