Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi59g00011 ATGGGGGACAAGTTTTTAGCTGTAGGGACCAATACACCTTTCAATGATGATGATGGAAGCTTGATTGGGATTATTTGTGTCTCCAGTGATTCACGACCCTTTCTTGAAACCAGAGTTCCCTTTTCAGTAGTGAAGAATGCAGAACCAGATTCGGGTTCCAACTGTCCTAGAAGTAGCATTGCAAATAAACTCGGCCTTGACTCTCAGCTGCCACTTCAAGTTGCTCTAGCATCAAAAATCTCAAATTTGGCATCAAAGGTGAGCAACAGAGTTAAGTCTAGAATCCGGACTGGAGAAAATAATGTCAACCGTGAAGGTGGGAGCGGAGAAAGTCATCATTCTGAGCTTAGTTTCTCAGACTATGTTCTCTCTGATCAGAGAGATGATGGTAACTCCAGTGGAGCTAGCACACCCAGAGGAGAGGTGCCACCATCTCCTTTTGGAGTATTTTTTCATGTTGAAGAGAAATCCCAAGCAAAAACTATGAGAGACTATGGCGATGAGAGTGAAGGAAAACCTATTCACAAGATCATAACTTCTAAGGCTGAAGCATGGATTCAAAAGAGAACATTATCATGGCCATGGAGAGCAAATGATCGAGAAGGATCTGAGGGAAGGAATATTCATGTTGCTTGGCCTTGGTTTCAGGGAGATCAAGAAAATGAGCCAGTTGATCAGAAGAATCTTTCTTCTCCATTGAAGCCAGAAAGCCTGGCAGGTGAGAGTCATCGACCTGCTAATAATGAGGCTTCAGGATCATGGTCCTCTTTTAATGTTAACAGCACAAGCAGTACCAGCAGCTGTGGGAGTGGCAGCAGTTCTGTGGTCAATAATAAAGTAGATGTTGACACTGATGGCTTGGATTATGAAATTTTGTGGGAGGACCTGACAATTGGAGAACAAATTGGGCAAGGTTCTTGTGGAACTGTATATCATGCTCTGTGGAATGGATCAGATGTTGCTGTCAAGGTTATCTCAAACCCAGAATACTCAGATGATGTGATACAGTCCTTCAGACAAGAGGTGTCTGTCATGAAAAGACTTCGTCATCCAAATATTCTTCTCTTTATGGGGGCAGTAACTTCACCTCAACGTCTCTGCATAGTGACAGAGTTTCTCCCACGTGGAAGCTTGTTGCGTTTGCTCCAGAGAAATACATCCAAACTTGATTGGAGACGGCGAGTTCATATCGCTTTAGATATTGCACGAGGTGTAAATTATCTTCATCATTGCAACCCCCCAATCATCCATCGAGATTTAAAGTCTTCAAATCTTCTAGTTGATAGGAATTGGAGTGTGAAGGTTGGTGATTTTGGTCTTTCGCGTCTTAAGCATAAAGCATATCTCACAACTAAGACTGGAAAGGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAATCCTCAGATGAGAAGTCTGATGTTTACAGCTTTGGGGTGATATTGTGGGAACTTACAACTGAAAAGATCCCTTGGGATACTCTCAACCCAATACAGGTTATTGGAGCTGTAGGATTTATGAACAATCGGCTAGAAATTCCAGATGATGCTGATCCACAGTGGGCTTCTATAATTGAGAGCTGCTGGCATAGTGATCCAGCTTGCCGACCAACATTCCAAGAACTGATGGAAAGGCTTAGAGAACTACAGAGACGGTATGCCATTCAGTTCCAAGTAGCCCGGTCTGCTGGTGGGGAAGGCACTCAAAAGGAGTCATAG 1725 0.4354 MGDKFLAVGTNTPFNDDDGSLIGIICVSSDSRPFLETRVPFSVVKNAEPDSGSNCPRSSIANKLGLDSQLPLQVALASKISNLASKVSNRVKSRIRTGENNVNREGGSGESHHSELSFSDYVLSDQRDDGNSSGASTPRGEVPPSPFGVFFHVEEKSQAKTMRDYGDESEGKPIHKIITSKAEAWIQKRTLSWPWRANDREGSEGRNIHVAWPWFQGDQENEPVDQKNLSSPLKPESLAGESHRPANNEASGSWSSFNVNSTSSTSSCGSGSSSVVNNKVDVDTDGLDYEILWEDLTIGEQIGQGSCGTVYHALWNGSDVAVKVISNPEYSDDVIQSFRQEVSVMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLLRLLQRNTSKLDWRRRVHIALDIARGVNYLHHCNPPIIHRDLKSSNLLVDRNWSVKVGDFGLSRLKHKAYLTTKTGKGTPQWMAPEVLRNESSDEKSDVYSFGVILWELTTEKIPWDTLNPIQVIGAVGFMNNRLEIPDDADPQWASIIESCWHSDPACRPTFQELMERLRELQRRYAIQFQVARSAGGEGTQKES 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi59g00011 574 Gene3D Transferase(Phosphotransferase) domain 1 375 560 - -
Gabi59g00011 574 SMART serkin_6 296 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi59g00011 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Gabi59g00011 574 Gene3D Phosphorylase Kinase; domain 1 289 373 - -
Gabi59g00011 574 Pfam Protein tyrosine and serine/threonine kinase 296 548 IPR001245 GO:0004672|GO:0006468
Gabi59g00011 574 CDD STKc_MAP3K-like 302 548 - -
Gabi59g00011 574 PRINTS Tyrosine kinase catalytic domain signature 456 466 IPR001245 GO:0004672|GO:0006468
Gabi59g00011 574 PRINTS Tyrosine kinase catalytic domain signature 370 383 IPR001245 GO:0004672|GO:0006468
Gabi59g00011 574 PRINTS Tyrosine kinase catalytic domain signature 475 497 IPR001245 GO:0004672|GO:0006468
Gabi59g00011 574 PRINTS Tyrosine kinase catalytic domain signature 409 427 IPR001245 GO:0004672|GO:0006468
Gabi59g00011 574 PRINTS Tyrosine kinase catalytic domain signature 519 541 IPR001245 GO:0004672|GO:0006468
Gabi59g00011 574 ProSiteProfiles Protein kinase domain profile. 296 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi59g00011 574 MobiDBLite consensus disorder prediction 218 254 - -
Gabi59g00011 574 MobiDBLite consensus disorder prediction 94 147 - -
Gabi59g00011 574 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 127 552 - -
Gabi59g00011 574 FunFam PAS domain-containing protein tyrosine kinase 289 373 - -
Gabi59g00011 574 MobiDBLite consensus disorder prediction 221 235 - -
Gabi59g00011 574 MobiDBLite consensus disorder prediction 112 139 - -
Gabi59g00011 574 SUPERFAMILY Protein kinase-like (PK-like) 283 548 IPR011009 -
Gabi59g00011 574 FunFam PAS domain-containing protein tyrosine kinase family protein 374 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi59g00011 Gabi-Chr59 75815 94616 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi59g00011 2 565 MAP Kinase Kinase Kinase AT3G06620 63.385 0.0 758
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gabi59g00011 PK_Tyr_Ser-Thr 4.2e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi59g00011 - - gmx:100815858 894.804