Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi59g00009 ATGGCCTCAGCAAGCAGAGCAGCAATTTCAGTTCACCAACAAGTTCAGAGCTCAACGACCACAACAAAACGACCACACAACAACAACAACAACAACAACAACAACAACGCAGAATCGATGAGCAAAGCCATCGCTCAGTACACCGAAGACGCGCGTTTGCACGCCGTTTTCGAGCAATCCGGCGAGTCCTTCGATTACTCGCAGTCCATGCGAATCGCCGCCGAATCGGTGCCGGAGAAGCAGATTACGGCTTACCTAGCTAAGATTCAGCGCGGCGGTTTCATCCAGCCGTTCGGTTGCATGATCGCCGTCGACGATCCAACGTTCCGAGTCCTCGGATACTCCGACAACGCCCGCGACATGCTCGGCATAACCCCTCAGTCTGTCCCCTCTCTCGACGACAAGGGTTCCGACGCCGCCTTCGCCGTCGGCGCAGACATTCGCTCTCTCTTCACTCCCTCCAGCGCTATCCTCCTCGAGAAGGCCTTTTGCGCTCGCGAAATCAGCCTCGTGAACCCGATTTGGATCCATTCCCGGAGCTCCGGGAAGCCTTTTTACGGCATCCTCCACCGGATTGACGTCGGCATCGTCATCGATTTGGAGCCCGCCAGAACGGAGGACCCTGCGCTTTCAATCGCCGGCGCCGTTCAGTCTCAGAAGCTCGCGGTTCGCGCCATTTCCCGGCTTCAGGCTCTTCCCGGCGGCGATGTGAAACTCCTCTGTGACACCGTGGTTGAGAGTGTTAGGGAATTGACTGGTTATGATAGGGTGATGGTGTATAAGTTTCATGAGGATGAGCATGGTGAGGTTGTTGCTGAGAGTAAGAGGCCTGATTTGGAGCCTTATATTGGTTTGCATTACCCTGCCACTGATATTCCTCAGGCTTCTAGGTTTTTATTTAAGCAGAATAGGGTTAGGATGATTGTGGATTGTCATGCTTCTCCTGTGAGGGTTGTTCAGGATGAGAACCTTGTGCAGCCTCTGTGTTTAGTTGGTTCCACCCTTCGTGCCCCACATGGTTGTCATGCTCAGTATATGGCTAATATGGGGTCTATTGCTTCTTTGGTTATGGCTGTCATCATCAATGGGAGTGATGAAGGAGCCGTTGGCGGCCGGAGTAATATGAGGCTGTGGGGTTTGGTTGTTTGCCATCATACTTCTGCTAGGTGTATTCCTTTTCCTTTGAGGTATGCTTGTGAGTTCTTGATGCAGGCCTTTGGGCTCCAATTGAATATGGAACTTCAGTTGGCGGCGCAGTCGTTGGAGAAACGAGTTTTGAGGACACAGACTCTCTTGTGTGACATGCTTCTTAGGGACTCTCCTACTGGCATTGTTACTCAGAGTCCTAGTATTATGGACTTGGTCAAGTGTGATGGAGCTGCTCTCTACTACCAAGGGATTTACTACCCCGTAGGTGTCACCCCTGCTGAGTCTCAGATAAGGGACATCATAGAGTGGTTGTTGGCCTTCCATGGAGATTCGACGGGTTTGAGTACTGATAGTCTGGCTGATGCTGGCTATCCTGGGGCTGCCTCTCTTGGGGATGCGGTTTGCGGGATGGCTGTTGCTTATATCACAGAAAAAGATTTTCTCTTTTGGTTCAGATCCCACACGGCAAAAGAGATCAAATGGGGTGGTGCAAAGCATCACCCCGAGGATAAGGACGATGGACAGAGAATGCATCCTCGTTCTTCCTTCAAGGCATTTCTTGAAGTGGTAAAAAGCCGTAGTTTGCCATGGGAGAATGCAGAAATGGATGCAATTCACTCTTTGCAGCTTATTCTGCGAGACTCGATTAGAGATGCTGAGCATAGCAATTCTAAGGCTGTTGTACATTCCCATTTTGCGGAGATGGAGTTGCAAGGGGTAGATGAACTGAGTTCTGTGGCTAGAGAAATGGTTAGATTGATAGAAACTGCCACTGCTCCCATATTTGCTGTTGATGTTGATGGCCACATAAATGGCTGGAATGCAAAGGTTTCAGAATTGACAGGACTCTCAGTTGAGGAGGCAATGGGGAAGTCCTTGGTTCATGATCTTGTGTATAAGGAGTTTGAAGAAACTGTAGACAAGCTTCTTTCTCGTGCTTTAAGAGGTGAAGAAGATAAGAACGTTGAGATAAAAATGAGGACGTTTGGCCCCGAACATCAAAATAAGGCAGTTTTTATACTGGTGAATGCTTGCTCCAGCAAGGATTATACAAATAATATAGTTGGAGTGTGCTTTGTTGGTCAGGATGTTACTGGTCAAAAAGTTGTAATGGATAAATTCATTCACATACAAGGTGATTACAAGGCTATTGTGCATAGTCCAAATGCATTGATCCCTCCCATTTTTGCATCGGATGATAACACGTGTTGCTTAGAGTGGAACACTGCCATGGAAAAACTTACTGGTTGGGGCCGTCCGGATGTCATTGGAAAAACGTTGGTGGGTGAGGTTTTTGGTAGTTGCTGCCAGTTGAAGGGTTCAGATGCTATAACTAAGCTCATGATTGTCTTGCACAATGCTCTTGGTGGACAAGATACAGATAAATTTCCTTTTTCATTTCTTGACCGACATGGAAAGTATGTGCAAACTTTCTTAACAGCAAATAAGAGGGTCAACATGGATGGTCAAATAATTGGGGCTTTTTGTTTTTTGCAAATCGTGAGTCCTGAACTTCAACAGGTTCTGAAAGTCCAGAAACAACAGGAGAAGCATTGCTTTGCTAGGATGAAAGAGTTAGCTTATATTTGTCAAGAAGTAAAGAATCCTTTGAGTGGCATACGCTTTACAAACTCCCTTTTGGAGGCTACAGCATTGACTGATGAGCAAAAACAGTTTCTTGAGACCAGTGCTGCTTGTGAGAAGCAAATGGTAAAGATAATACGGGACATTGATCTGGACAGCATTGAGGATGGGTCCTTGGAGCTTGAAAAGGGGGAATTCTTGCTTGGGAATGTCATAAATGCAGTTGTTAGCCAAGTAATGCTATTGCTAAGAGAAAGGAATCTACAGTTGATTCGTGATATTCCTGAAGAAATCAAGACGTTGGCTGTTTATGGTGATCAATTGAGGATTCAACAAGTCTTAGCTGATTTCTTATTGAATATGGTGCGCTATGCACCATCTCCAGATGGCTGGGTAGAGATTCACGTACGTCCAAGAATAAAACAAATTTCAGATGGACTTACTCTTCTCCATGCTGAATTTAGGATGGTATGTCCTGGTGAAGGTCTTCCTCCTGAATTGATTCAGGATATGTTCCATAACAGCCAGTGGGTGACTCAAGAAGGTTTAGGGTTGAGCATGAGCAGGAAGATTCTAAAGTTAATGAACGGCGAAGTCCAATATATCAGAGAGGCAGAACGATGTTACTTTCTTGTTCTTCTTGAACTACCTGTGACACGGAGAAGCTCAAAGTGTTAG 3411 0.4653 MASASRAAISVHQQVQSSTTTTKRPHNNNNNNNNNNAESMSKAIAQYTEDARLHAVFEQSGESFDYSQSMRIAAESVPEKQITAYLAKIQRGGFIQPFGCMIAVDDPTFRVLGYSDNARDMLGITPQSVPSLDDKGSDAAFAVGADIRSLFTPSSAILLEKAFCAREISLVNPIWIHSRSSGKPFYGILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISRLQALPGGDVKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASPVRVVQDENLVQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGSDEGAVGGRSNMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAAQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGIYYPVGVTPAESQIRDIIEWLLAFHGDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSIRDAEHSNSKAVVHSHFAEMELQGVDELSSVAREMVRLIETATAPIFAVDVDGHINGWNAKVSELTGLSVEEAMGKSLVHDLVYKEFEETVDKLLSRALRGEEDKNVEIKMRTFGPEHQNKAVFILVNACSSKDYTNNIVGVCFVGQDVTGQKVVMDKFIHIQGDYKAIVHSPNALIPPIFASDDNTCCLEWNTAMEKLTGWGRPDVIGKTLVGEVFGSCCQLKGSDAITKLMIVLHNALGGQDTDKFPFSFLDRHGKYVQTFLTANKRVNMDGQIIGAFCFLQIVSPELQQVLKVQKQQEKHCFARMKELAYICQEVKNPLSGIRFTNSLLEATALTDEQKQFLETSAACEKQMVKIIRDIDLDSIEDGSLELEKGEFLLGNVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLADFLLNMVRYAPSPDGWVEIHVRPRIKQISDGLTLLHAEFRMVCPGEGLPPELIQDMFHNSQWVTQEGLGLSMSRKILKLMNGEVQYIREAERCYFLVLLELPVTRRSSKC 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi59g00009 1136 ProSiteProfiles PAS repeat profile. 763 815 IPR000014 -
Gabi59g00009 1136 Pfam GAF domain 237 414 IPR003018 GO:0005515
Gabi59g00009 1136 SUPERFAMILY GAF domain-like 422 599 - -
Gabi59g00009 1136 SUPERFAMILY GAF domain-like 216 411 - -
Gabi59g00009 1136 FunFam Phytochrome 419 549 - -
Gabi59g00009 1136 ProSiteProfiles Histidine kinase domain profile. 911 1131 IPR005467 -
Gabi59g00009 1136 Pfam PAS fold 763 882 IPR013767 GO:0006355
Gabi59g00009 1136 Pfam PAS fold 632 747 IPR013767 GO:0006355
Gabi59g00009 1136 CDD PAS 640 747 IPR000014 -
Gabi59g00009 1136 SMART HisKA_10 904 968 IPR003661 GO:0000155|GO:0007165
Gabi59g00009 1136 SMART gaf_1 236 424 IPR003018 GO:0005515
Gabi59g00009 1136 CDD HisKA 904 964 IPR003661 GO:0000155|GO:0007165
Gabi59g00009 1136 Gene3D PAS domain 776 886 - -
Gabi59g00009 1136 ProSitePatterns Phytochrome chromophore attachment site signature. 336 345 IPR013516 -
Gabi59g00009 1136 FunFam Phytochrome 776 884 - -
Gabi59g00009 1136 CDD HATPase_Phy-like 1015 1127 IPR044767 -
Gabi59g00009 1136 Pfam PAS fold 84 203 IPR013654 GO:0006355
Gabi59g00009 1136 Gene3D PAS domain 88 339 - -
Gabi59g00009 1136 FunFam Phytochrome 885 966 - -
Gabi59g00009 1136 SUPERFAMILY PYP-like sensor domain (PAS domain) 636 744 IPR035965 -
Gabi59g00009 1136 SUPERFAMILY PYP-like sensor domain (PAS domain) 777 881 IPR035965 -
Gabi59g00009 1136 MobiDBLite consensus disorder prediction 1 37 - -
Gabi59g00009 1136 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 236 404 IPR016132 -
Gabi59g00009 1136 PIRSF Phytochrome_conventional 19 1136 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Gabi59g00009 1136 SMART HKATPase_4 1016 1131 IPR003594 -
Gabi59g00009 1136 SUPERFAMILY PYP-like sensor domain (PAS domain) 89 206 IPR035965 -
Gabi59g00009 1136 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 893 960 IPR036097 GO:0000155|GO:0007165
Gabi59g00009 1136 ProSiteProfiles PAS repeat profile. 629 700 IPR000014 -
Gabi59g00009 1136 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1016 1121 IPR003594 -
Gabi59g00009 1136 Gene3D - 217 575 IPR029016 -
Gabi59g00009 1136 FunFam Phytochrome 967 1133 - -
Gabi59g00009 1136 Gene3D - 419 592 IPR043150 -
Gabi59g00009 1136 PANTHER OS08G0260000 PROTEIN 80 966 - -
Gabi59g00009 1136 Gene3D - 887 966 - -
Gabi59g00009 1136 NCBIfam PAS domain S-box protein 636 751 IPR000014 -
Gabi59g00009 1136 SMART pas_2 631 698 IPR000014 -
Gabi59g00009 1136 SMART pas_2 762 832 IPR000014 -
Gabi59g00009 1136 Gene3D PAS domain 627 751 - -
Gabi59g00009 1136 PRINTS Phytochrome signature 529 548 IPR001294 GO:0006355|GO:0009584
Gabi59g00009 1136 PRINTS Phytochrome signature 632 648 IPR001294 GO:0006355|GO:0009584
Gabi59g00009 1136 PRINTS Phytochrome signature 251 270 IPR001294 GO:0006355|GO:0009584
Gabi59g00009 1136 PRINTS Phytochrome signature 562 580 IPR001294 GO:0006355|GO:0009584
Gabi59g00009 1136 PRINTS Phytochrome signature 725 742 IPR001294 GO:0006355|GO:0009584
Gabi59g00009 1136 PRINTS Phytochrome signature 745 765 IPR001294 GO:0006355|GO:0009584
Gabi59g00009 1136 PRINTS Phytochrome signature 151 173 IPR001294 GO:0006355|GO:0009584
Gabi59g00009 1136 PRINTS Phytochrome signature 336 357 IPR001294 GO:0006355|GO:0009584
Gabi59g00009 1136 PRINTS Phytochrome signature 444 464 IPR001294 GO:0006355|GO:0009584
Gabi59g00009 1136 PRINTS Phytochrome signature 651 666 IPR001294 GO:0006355|GO:0009584
Gabi59g00009 1136 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 979 1128 IPR036890 -
Gabi59g00009 1136 Pfam Phytochrome region 427 601 IPR013515 GO:0006355|GO:0009584
Gabi59g00009 1136 CDD PAS 774 882 IPR000014 -
Gabi59g00009 1136 FunFam Phytochrome 625 757 - -
Gabi59g00009 1136 Pfam His Kinase A (phospho-acceptor) domain 908 968 IPR003661 GO:0000155|GO:0007165
Gabi59g00009 1136 Gene3D - 967 1133 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi59g00009 Gabi-Chr59 62814 69385 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi59g00009 10 1129 Histidine Kinase Gene Family AT4G16250 73.610 0.0 1754
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi59g00009 K12121 - gmx:100799831 2049.25