Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi594g00003 ATGGAATCCCCCATTCAGGAGCACGCGTCCAAACTTCTTCCAGCTCAAACCCATATATTCAATCACATTTACAGCTTCATAAACTCCATGTCCCTTAAATGTGCAATTGACTTGTGCATACCAGATATCATACACAAGTATAGCCAACCCATGCCACTGTCACAACTCGTTGCTTCACTACCAATTCACCCCTCCAAAACTGGGGGCATCTTTCGCTTGATGCGAATTTTGACCCATTCTGGTTTCTTCTTTCAGCAGAATGTTACTGAAAATGAGCTAGAAGTGAGGTATGGGCTAACTGATGCATCTAAACTACTGCTTAAGGACCATCCCTTAAGTATGACATCTTACTTGCATTTCACATTTGATCCAACTAAGATAAATTCATGGCTTCAATTTTCTACTTGGTTCAAAAATGATGATCCTACTCCATTTTTCACCGAAAATGGGATGACATTTTGGGATCATGCTGGCCATGATGCCAAACTCAATGATGCCATGGCTAGTGATGCTCGATTGATTTCCAGTGTGGTGATTGAGAAGTGTAAGGGAGTGTTCATGGGATTGGAGTCATTGGTTGATGTTGGGGGAGGCACAGGGACTATGGCAAAGGCCATTGCCAAATCATTCCCACAACTTGAATGTATTGTATTTGATCTCCCACATGTTGTTGATGGCTTGCAAGGGAATGACAATCTAAAATATGTTGGAGGTGACATGTTTGAGGCAATTCCTCCTGCAGATGCCCTTCTGTTGAAGTGGATATTGCATGACTGGAACGATGAGGAGTGTGTGAAAATACTGAAGAAATGCAAGGAGGCAATCACTAGCAAAGGCAAAGAAGGAAAGGTGATTATCATAGACATGGTGCTGGAGACCGAGAAAGGAGACCATGAATCTGTTGAAACACAGCTCTTCTTTGATATGATGATGATGGTGTTGGTCACTGGAAAAGAGAGAAATGAGAAAGAATGGGCCAAGTTGATTTTTACTGCTGGTTTCAATGACTATAAGATAACTCCGGTTTCTGGTTTACGGTCTCTCATTGAGGTTTATCCATAG 1062 0.42 MESPIQEHASKLLPAQTHIFNHIYSFINSMSLKCAIDLCIPDIIHKYSQPMPLSQLVASLPIHPSKTGGIFRLMRILTHSGFFFQQNVTENELEVRYGLTDASKLLLKDHPLSMTSYLHFTFDPTKINSWLQFSTWFKNDDPTPFFTENGMTFWDHAGHDAKLNDAMASDARLISSVVIEKCKGVFMGLESLVDVGGGTGTMAKAIAKSFPQLECIVFDLPHVVDGLQGNDNLKYVGGDMFEAIPPADALLLKWILHDWNDEECVKILKKCKEAITSKGKEGKVIIIDMVLETEKGDHESVETQLFFDMMMMVLVTGKERNEKEWAKLIFTAGFNDYKITPVSGLRSLIEVYP 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi594g00003 353 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Gabi594g00003 353 Gene3D Vaccinia Virus protein VP39 107 353 IPR029063 -
Gabi594g00003 353 SUPERFAMILY "Winged helix" DNA-binding domain 9 111 IPR036390 -
Gabi594g00003 353 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 352 IPR029063 -
Gabi594g00003 353 CDD AdoMet_MTases 192 287 - -
Gabi594g00003 353 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 353 IPR016461 GO:0008168
Gabi594g00003 353 Gene3D - 3 106 IPR036388 -
Gabi594g00003 353 PIRSF O-mtase 1 353 IPR016461 GO:0008168
Gabi594g00003 353 FunFam Coniferyl alcohol 9-O-methyltransferase 3 106 - -
Gabi594g00003 353 Pfam O-methyltransferase domain 132 335 IPR001077 GO:0008171
Gabi594g00003 353 PANTHER O-METHYLTRANSFERASE 15 338 IPR016461 GO:0008168
Gabi594g00003 353 FunFam O-methyltransferase ZRP4 108 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi594g00003 Gabi-Chr594 135671 136923 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi594g00003 30 351 Monolignol Biosynthesis Gene Families AT5G54160 32.931 2.33e-49 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi594g00003 - K16040 gmx:100781008 557.37