Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi593g00013 ATGGCTGACCCATCATCCTCCTCTTCTTCCTTCCTCTACGATGTATTCCTCAGCTTCAGAGGCACTGATACTCGCTTTGGTTTCAGTGGCTATCTCTACAAAGCTCTTTCTGATAAGGGAATTTTCACCTTCATTGATGATGAGGAGCTTCAGAAAGGAGGGAAAATCACAACATCACTTCTCAAGGCTATTCAACAGTCTAGGATCGCCATCGTTGTCCTCTCTACCAACTATGCATCTTCTTCATTTTGCTTAGAGGAACTCTCCAACATCACTGACTTCATTAAGAGAAAGGATCGGTTGGTTCTGCCAGTTTTTTACAAGGTGGATCCTTCTGATGTGCGACATCAGAAGGGTAGTTACGGAGAAGCATTGAATAATCATGAAGTGAAATTTAGGGCTAACAAGGAGACGTTCAACGATAACATGGAGAGATTGCAGAAATGGAGGGCAGCTCTACAACAAGTAGCTAACTTTTCTGGCTTTCATTTAGAACATGGGGATGAATATGAACACAAGTTTATTGAGAACATTGTCAAAGAGGTCTCCAAGAATATTAAGCGTGTTCCTTTACCTGTTGCTCAGCACCCAGTTGGACTGGAGTCTCGAGTAGAAGAAGTACTAAAGTTGCTTATGGATCCCAGATCTAGTGATGGGGTCCACATGGTAGGGATCCATGGAATTGGTGGAGTGGGAAAGACGACACTTGCTCTAGGAGTTTATAATTCGGTTGCTGAAGATTTTGAGGGTTTATGTTTTCTTCAAAATGTGAGAGAAAATTCAAACACACATGGTGGGTTACAACATCTCCAAGAGATCCTTCTTGGAAAAATGTTAGGAGAGGAGAAAGATAAGTTAGCAAGTGTCCCAGAAGGAAGTTCAGAAATACAGTGTAGGCTCCGGGAAAAGAAGGTTCTCTTGATTTTAGATGATGTTGATAAGCTGGAGCAGTTACAGGCTCTTGCTGGAAGTCCTGATTGGCTTGGTCCCGGGAGCAGAGTCATCATCACAACTCGTGACAAACAGTTGTTAGCATGTCACGAGGTTGAAAAAACATATGAGGTGGAGGAGTTGAATGGAAAAGATGCTCTTAAACTGCTACGATGGAAAGCTTTTAAAACCCACGAAGTTGATCAAAGATTTAACAACATTTTATACCGTGCATTAACTTTTGCTGCTGGCCTTCCATTGGCTCTGGAAGTTATAGGTTCCAGCTTGTTTGGAAAAAGTGTAGATGAATGGAAATCTGCATTAGACCGGTATGAAAGAATTCCCATAAAAGAGATCCAAAAGAAACTAGAAGTGAGCTTTGATGCTCTGGAGGAAGAAGAAAAGAGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGATATCCATTGGCAAAGCTCCTAGATATATTGCATGCTCATTATGGTGACTGCATGAAATATCATATTGGAGTGTTAGTTGAAAAGTCCCTCGTAAAGATTCATGAGTATGGTCGAGTGACTCTACATGACTTGATAGAGGACATGGGTAAAGAAATTGTCCGACGGGAATCGCCGAATAATCCTGGGGAACGTAGTAGGTTATGGTTCCATGAAGATATAATTGATGTCTTACAAGAAGATATGAAGTGTGTGAATATGAGAGTTCTGAATTTTGACCTTTGTGGAAGTTTAACACATATACCTGATGTATCTGGTCTCCCAAATTTAGAAGAATTATCACTTAGGCGTTGTGAGAATTTAACTACAATTCATGATTCGGTTGGGTTGTTGGATAAACTTAGAATATTGAATTGTTTGTGTTGTATAAAGCTTCGAGCTCTTCCTCCCATGAAGTTGACTTCTCTTGAAGATCTCAATCTTTTTGGATGCTCAAGTCTTGAGAGTTTTCCAGAAATATTAGGAAAGATGAAACATATAGAAGTTCTCGACTTGACTAATACTAACATAAAAGAATTGCCATCTTCAATTGAAAATCTCACTGGGCTTCTACAATTAGATATGTTGGGTTGTCCAATTGTTGACTTACCAAGTAGCGTTGTCAATATGCGAGAACTGGCTGTAATTATGGGTATGTATTTGAAATTGGGTTCATTGCCAGAAGTGGACTCAATGGTGTCTTCAAACTTACAACGTCTAGAACTCAACTGGTGCAATGTGTCAGATGAATTTCTTGCAATTGGTCTCACCTGGTTTGGTAATGTGAAAGAGTTAAACCTCCCTTGCAATAATTTCACAATTATTCCTGAATGCATCAAAGAATGTCGCCTTTTAACGAAGCTTAATTTGGATCATTGCAAGCATCTTCGAGAAATTAGAGGGATTCCACCAAAATTAGAGCGTTTCTCTGCACGAGACTGCTCATCCTTGACTTCCGAGTCTAAAAGCAAGTTATTGGATCAGAAACTTCATGAGGCTGCAAACACCTTGTTTCTTTTGCCTGGAAGAACTGTAGGGATTCCAGAGTGGTTTGAGCACCGCAGCAGGGGATTGTCAATTTCATTCTGGTTTCGTAACAATTTCCCTCCCATAGCTATCTGTCTTCTTGTGGATATCTTGGTTTGTAATGCACCCGTTGTGATTATTAATGGCAACAAAGTTTTCGAAGCTCCTTTTCTTCTGTTGTTACCGAATCATACATATCTTTTTGGTTTGCATCAAGAGAATATTAATCTGGATGAAGTGACATTAAAAAATGAGTGGAACCGTGTGAAGGTTACATGTGGATCCATCCGAAAACGTGATGATAAAGGCGAAATAGGAATCCATGTATTCAAAGAGAAAAATAGCACGGAGGATATTCTATTCATTAATCCTTATCCTGAATCCAATTCAGAGGATGGTAATTCTGACAGTGAAGAATCAGTGGATACAAGAGGAAGAATACTTGTTACGTTCAGTCTGAATGATTCTGACCGTGAAGAATCACTAGTTCAGAGGAAGAGAAGGAAAACACATGGTTAG 2952 0.398 MADPSSSSSSFLYDVFLSFRGTDTRFGFSGYLYKALSDKGIFTFIDDEELQKGGKITTSLLKAIQQSRIAIVVLSTNYASSSFCLEELSNITDFIKRKDRLVLPVFYKVDPSDVRHQKGSYGEALNNHEVKFRANKETFNDNMERLQKWRAALQQVANFSGFHLEHGDEYEHKFIENIVKEVSKNIKRVPLPVAQHPVGLESRVEEVLKLLMDPRSSDGVHMVGIHGIGGVGKTTLALGVYNSVAEDFEGLCFLQNVRENSNTHGGLQHLQEILLGKMLGEEKDKLASVPEGSSEIQCRLREKKVLLILDDVDKLEQLQALAGSPDWLGPGSRVIITTRDKQLLACHEVEKTYEVEELNGKDALKLLRWKAFKTHEVDQRFNNILYRALTFAAGLPLALEVIGSSLFGKSVDEWKSALDRYERIPIKEIQKKLEVSFDALEEEEKSVFLDIACCFKGYPLAKLLDILHAHYGDCMKYHIGVLVEKSLVKIHEYGRVTLHDLIEDMGKEIVRRESPNNPGERSRLWFHEDIIDVLQEDMKCVNMRVLNFDLCGSLTHIPDVSGLPNLEELSLRRCENLTTIHDSVGLLDKLRILNCLCCIKLRALPPMKLTSLEDLNLFGCSSLESFPEILGKMKHIEVLDLTNTNIKELPSSIENLTGLLQLDMLGCPIVDLPSSVVNMRELAVIMGMYLKLGSLPEVDSMVSSNLQRLELNWCNVSDEFLAIGLTWFGNVKELNLPCNNFTIIPECIKECRLLTKLNLDHCKHLREIRGIPPKLERFSARDCSSLTSESKSKLLDQKLHEAANTLFLLPGRTVGIPEWFEHRSRGLSISFWFRNNFPPIAICLLVDILVCNAPVVIINGNKVFEAPFLLLLPNHTYLFGLHQENINLDEVTLKNEWNRVKVTCGSIRKRDDKGEIGIHVFKEKNSTEDILFINPYPESNSEDGNSDSEESVDTRGRILVTFSLNDSDREESLVQRKRRKTHG 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi593g00013 983 Gene3D Ribonuclease Inhibitor 625 801 IPR032675 -
Gabi593g00013 983 Gene3D - 186 355 IPR027417 -
Gabi593g00013 983 MobiDBLite consensus disorder prediction 935 955 - -
Gabi593g00013 983 ProSiteProfiles TIR domain profile. 11 186 IPR000157 GO:0007165
Gabi593g00013 983 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 771 IPR044974 GO:0006952
Gabi593g00013 983 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 188 - -
Gabi593g00013 983 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 451 IPR027417 -
Gabi593g00013 983 Coils Coil 426 446 - -
Gabi593g00013 983 SMART till_3 12 159 IPR000157 GO:0007165
Gabi593g00013 983 Pfam NB-ARC domain 201 438 IPR002182 GO:0043531
Gabi593g00013 983 PRINTS Disease resistance protein signature 607 623 - -
Gabi593g00013 983 PRINTS Disease resistance protein signature 392 406 - -
Gabi593g00013 983 PRINTS Disease resistance protein signature 299 313 - -
Gabi593g00013 983 PRINTS Disease resistance protein signature 222 237 - -
Gabi593g00013 983 SUPERFAMILY "Winged helix" DNA-binding domain 428 535 IPR036390 -
Gabi593g00013 983 SUPERFAMILY L domain-like 528 798 - -
Gabi593g00013 983 Gene3D Ribonuclease Inhibitor 527 624 IPR032675 -
Gabi593g00013 983 Gene3D - 357 441 IPR042197 -
Gabi593g00013 983 Pfam TIR domain 13 186 IPR000157 GO:0007165
Gabi593g00013 983 Gene3D - 12 185 IPR035897 -
Gabi593g00013 983 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 162 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi593g00013 Gabi-Chr593 116284 121427 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi593g00013 198 788 WRKY Transcription Factor Family AT5G45050 28.302 1.27e-51 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi593g00013 - - vra:106764825 975.311