Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi593g00012 ATGGCTGACCCATCATCCTCCTCTTCTTCCTTCCTCTACGATGTATTCCTCAGCTTCAGAGGCACTGATACTCGCTTTGGTTTCAGTGGCTATCTCTACAAAGCTCTTTCTGATAAGGGAATTTTCACCTTCATTGATGATGAGGAGCTTCAGAAAGGAGGGAAAATCACAACATCACTTCTCAAGGCTATTCAACAGTCTAGGATCGCCATCGTTGTCCTCTCTACCAACTATGCATCTTCTTCATTTTGCTTAGAGGAACTCTCCAACATCACTGACTTCATTAAGAGAAAGGATCGGTTGGTTCTGCCAGTTTTTTACAAGGTGGATCCTTCTGATGTGCGACATCAGAAGGGTAGTTACGGAGAAGCATTGAATAATCATGAAGTGAAATTTAGGGCTAACAAGGAGACGTTCAACGATAACATGGAGAGATTGCAGAAATGGAGGGCAGCTCTACAACAAGTAGCTAACTTTTCTGGCTTTCATTTAGAACATGGGGATGAATATGAACACAAGTTTATTGAGAACATTGTCAAAGAGGTCTCCAAGAATATTAAGCGTGTTCCTTTACCTGTTGCTCAGCACCCAGTTGGACTGGAGTCTCGAGTAGAAGAAGTACTAAAGTTGCTTATGGATCCCAGATCTAGTGATGGGGTCCACATGGTAGGGATCCATGGAATTGGTGGAGTGGGAAAGACGACACTTGCTCTAGGAGTTTATAATTCGGTTGCTGAAGATTTTGAGGGTTTATGTTTTCTTCAAAATGTGAGAGAAAATTCAAACACACATGGTGGGTTACAACATCTCCAAGAGATCCTTCTTGGAAAAATGTTAGGAGAGGAGAAAGATAAGTTAGCAAGTGTCCCAGAAGGAAGTTCAGAAATACAGTGTAGGCTCCGGGAAAAGAAGGTTCTCTTGATTTTAGATGATGTTGATAAGCTGGAGCAGTTACAGGCTCTTGCTGGAAGTCCTGATTGGCTTGGTCCCGGGAGCAGAGTCATCATCACAACTCGTGACAAACAGTTGTTAGCATGTCACGAGGTTGAAAAAACATATGAGGTGGAGGAGTTGAATGGAAAAGATGCTCTTAAACTGCTACGATGGAAAGCTTTTAAAACCCACGAAGTTGATCAAAGATTTAACAACATTTTATACCGTGCATTAACTTTTGCTGCTGGCCTTCCATTGGCTCTGGAAGTTATAGGTTCCAGCTTGTTTGGAAAAAGTGTAGATGAATGGAAATCTGCATTAGACCGGTATGAAAGAATTCCCATAAAAGAGATCCAAAAGAAACTAGAAGTGAGCTTTGATGCTCTGGAGGAAGAAGAAAAGAGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGATATCCATTGGCAAAGCTCCTAGATATATTGCATGCTCATTATGGTGACTGCATGAAATATCATATTGGAGTGTTAGTTGAAAAGTCCCTCGTAAAGATTCATGAGTATGGTCGAGTGACTCTACATGACTTGATAGAGGACATGGGTAAAGAAATTGTCCGACGGGAATCGCCGAATAATCCTGGGGAACGTAGTAGGTTATGGTTCCATGAAGATATAATTGATGTCTTACAAGAAGATATGGGAACTAACAAAATTAGAATCATACATTTGAACTCCCCCTTAAGTGATAAAGAACAAGTGGAATGGAGTGGAAAGGCATTTGTGAGGATGAAAAACCTCAAGACACTTATTATTAATGCTGGTCGTTTTTCCAAAGGTCCTGAACATCTTCCAAATAGTTTAAAAATACTTGAATGGTGGAGATATCCTTCACAGTATTTACCATCTGATTTTCATCCAAAGAAACTTGTTATATGCAAGATAATGGATTGTTGCTTTAACTCGCCCGAGTTATTGAAGAAGTGTGTGAATATGAGAGTTCTGAATTTTGACCTTTGTGGAAGTTTAACACATATACCTGATGTATCTGGTCTCCCAAATTTAGAAGAATTATCACTTAGGCGTTGTGAGAATTTAACTACAATTCATGATTCGGTTGGGTTGTTGGATAAACTTAGAATATTGAATTGTTTGTGTTGTATAAAGCTTCGAGCTCTTCCTCCCATGAAGTTGACTTCTCTTGAAGATCTCAATCTTTTTGGATGCTCAAGTCTTGAGAGTTTTCCAGAAATATTAGGAAAGATGAAACATATAGAAGTTCTCGACTTGACTAATACTAACATAAAAGAATTGCCATCTTCAATTGAAAATCTCACTGGGCTTCTACAATTAGATATGTTGGGTTGTCCAATTGTTGACTTACCAAGTAGCGTTGTCAATATGCGAGAACTGGCTGTAATTATGGGTATGTATTTGAAATTGGGTTCATTGCCAGAAGTGGACTCAATGGTGTCTTCAAACTTACAACGTCTAGAACTCAACTGGTGCAATGTGTCAGATGAATTTCTTGCAATTGGTCTCACCTGGTTTGGTAATGTGAAAGAGTTAAACCTCCCTTGCAATAATTTCACAATTATTCCTGAATGCATCAAAGAATGTCGCCTTTTAACGAAGCTTAATTTGGATCATTGCAAGCATCTTCGAGAAATTAGAGGGATTCCACCAAAATTAGAGCGTTTCTCTGCACGAGACTGCTCATCCTTGACTTCCGAGTCTAAAAGCAAGTTATTGGATCAGAAACTTCATGAGGCTGCAAACACCTTGTTTCTTTTGCCTGGAAGAACTGTAGGGATTCCAGAGTGGTTTGAGCACCGCAGCAGGGGATTGTCAATTTCATTCTGGTTTCGTAACAATTTCCCTCCCATAGCTATCTGTCTTCTTGTGGATATCTTGGTTTGTAATGCACCCGTTGTGATTATTAATGGCAACAAAGTTTTCGAAGCTCCTTTTCTTCTGTTGTTACCGAATCATACATATCTTTTTGGTTTGCATCAAGAGAATATTAATCTGGATGAAGTGACATTAAAAAATGAGTGGAACCGTGTGAAGGTTACATGTGGATCCATCCGAAAACGTGATGATAAAGGCGAAATAGGAATCCATGTATTCAAAGAGAAAAATAGCACGGAGGATATTCTATTCATTAATCCTTATCCTGAATCCAATTCAGAGGATGGTAATTCTGACAGTGAAGAATCAGTGGATACAAGAGGAAGAATACTTGTTACGTTCAGTCTGAATGATTCTGACCGTGAAGAATCACTAGTTCAGAGGAAGAGAAGGAAAACACATGGTTAG 3231 0.394 MADPSSSSSSFLYDVFLSFRGTDTRFGFSGYLYKALSDKGIFTFIDDEELQKGGKITTSLLKAIQQSRIAIVVLSTNYASSSFCLEELSNITDFIKRKDRLVLPVFYKVDPSDVRHQKGSYGEALNNHEVKFRANKETFNDNMERLQKWRAALQQVANFSGFHLEHGDEYEHKFIENIVKEVSKNIKRVPLPVAQHPVGLESRVEEVLKLLMDPRSSDGVHMVGIHGIGGVGKTTLALGVYNSVAEDFEGLCFLQNVRENSNTHGGLQHLQEILLGKMLGEEKDKLASVPEGSSEIQCRLREKKVLLILDDVDKLEQLQALAGSPDWLGPGSRVIITTRDKQLLACHEVEKTYEVEELNGKDALKLLRWKAFKTHEVDQRFNNILYRALTFAAGLPLALEVIGSSLFGKSVDEWKSALDRYERIPIKEIQKKLEVSFDALEEEEKSVFLDIACCFKGYPLAKLLDILHAHYGDCMKYHIGVLVEKSLVKIHEYGRVTLHDLIEDMGKEIVRRESPNNPGERSRLWFHEDIIDVLQEDMGTNKIRIIHLNSPLSDKEQVEWSGKAFVRMKNLKTLIINAGRFSKGPEHLPNSLKILEWWRYPSQYLPSDFHPKKLVICKIMDCCFNSPELLKKCVNMRVLNFDLCGSLTHIPDVSGLPNLEELSLRRCENLTTIHDSVGLLDKLRILNCLCCIKLRALPPMKLTSLEDLNLFGCSSLESFPEILGKMKHIEVLDLTNTNIKELPSSIENLTGLLQLDMLGCPIVDLPSSVVNMRELAVIMGMYLKLGSLPEVDSMVSSNLQRLELNWCNVSDEFLAIGLTWFGNVKELNLPCNNFTIIPECIKECRLLTKLNLDHCKHLREIRGIPPKLERFSARDCSSLTSESKSKLLDQKLHEAANTLFLLPGRTVGIPEWFEHRSRGLSISFWFRNNFPPIAICLLVDILVCNAPVVIINGNKVFEAPFLLLLPNHTYLFGLHQENINLDEVTLKNEWNRVKVTCGSIRKRDDKGEIGIHVFKEKNSTEDILFINPYPESNSEDGNSDSEESVDTRGRILVTFSLNDSDREESLVQRKRRKTHG 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi593g00012 1076 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 765 IPR044974 GO:0006952
Gabi593g00012 1076 Gene3D - 12 185 IPR035897 -
Gabi593g00012 1076 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 162 IPR035897 -
Gabi593g00012 1076 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 188 - -
Gabi593g00012 1076 MobiDBLite consensus disorder prediction 1028 1048 - -
Gabi593g00012 1076 Gene3D - 186 355 IPR027417 -
Gabi593g00012 1076 ProSiteProfiles TIR domain profile. 11 186 IPR000157 GO:0007165
Gabi593g00012 1076 Gene3D Ribonuclease Inhibitor 721 893 IPR032675 -
Gabi593g00012 1076 Gene3D - 357 441 IPR042197 -
Gabi593g00012 1076 Pfam TIR domain 13 186 IPR000157 GO:0007165
Gabi593g00012 1076 PRINTS Disease resistance protein signature 700 716 - -
Gabi593g00012 1076 PRINTS Disease resistance protein signature 299 313 - -
Gabi593g00012 1076 PRINTS Disease resistance protein signature 222 237 - -
Gabi593g00012 1076 PRINTS Disease resistance protein signature 392 406 - -
Gabi593g00012 1076 Coils Coil 426 446 - -
Gabi593g00012 1076 SMART till_3 12 159 IPR000157 GO:0007165
Gabi593g00012 1076 SUPERFAMILY "Winged helix" DNA-binding domain 428 535 IPR036390 -
Gabi593g00012 1076 Gene3D Ribonuclease Inhibitor 537 720 IPR032675 -
Gabi593g00012 1076 Pfam NB-ARC domain 201 438 IPR002182 GO:0043531
Gabi593g00012 1076 SUPERFAMILY L domain-like 556 891 - -
Gabi593g00012 1076 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 451 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi593g00012 Gabi-Chr593 116284 121427 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi593g00012 8 778 WRKY Transcription Factor Family AT4G12020 29.750 5.38e-75 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi593g00012 - - gmx:100780257 1182.55