Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi593g00011 ATGGCATCCTCCTCTTCCTTCCTCTATGATGTGTTCCTCAGCTTCAGAGGCACTGATACTCGCTACGGTTTCACCGGAAATCTCAACAAAGCTCTTCGTGATAAGGGAATTTCCACCTTCATTGATGACAAGGAGCTTCAGAAAGGAGGAGAAATCACGACATCACTTCTCGAGGCTATTCAACAGTCCAGAATTGCCATCATTGTGCTCTCTGCTAACTATGCATCTTCTTCATTTTGCTTAGAAGAACTCTCCAACATCATTCACCATATTAATAATATAGAGAGTCGGAAGGTTTTTCCAATATTTTATAAGGTGGATCCTTCTCATGTGCGTAAACAGACAGAGACTTTTGGAAAAGCATTGGTTGATCATGAAGAGAAGTTCAAGGCTAATAAGGATAAGTTAGAGGATAACATGAAGAGGTTGCAGAAATGGAGGACGGCTCTGGAGCAAGTAGCTAACTTATCTGGCTTTCATTTCAAAGATGGGGATGAATATGAACACAAGTTTATTGAGAACATTGTCAAAGAGGTCTCCAAGAATATTAAGCGTGTTCCTTTACCTTTTGCCAATCACCCAATTGGACTGGAGTCTCGAGTAGAAGAAGTAGTAAAGTTGCTTATGGATGCCGGATCTAATGATGGGGTCGACATGGTAGGGATCCATGGAATTGGTGGAGTAGGAAAGACGACACTTGTTCTAGCAGTTTATAATTTTGTTGCTGAAAATTTTGAGGGTTTATGTTTTCTTCACAATGTGAGAGAAAATTCAAACACACATGGTGGGTTACGACATCTCCAAGAAATCCTTCTTGGAGAAATGTTTGGAGGGGGGGAAATTAAGTTAGCAAGTGTTTTACAAGGAAGTTCAGAAATACAGCGTAGACTCCGAGTAAAGAAGGTTCTCTTGATTTTAGATGATGTTGATAAGCCGGAGCAGTTACAGGCTCTCGCCGGAAGTCCTGATTGGTTTGGTCCCGGGAGCAGAGTCATCATCACAACTCGTGACAAACAGTTGTTAGCATGTCATGAGGTTAAAAAAACATATGAGGTGAATGGGTTGAATGGAAAAGATGCTCTTAAACTGCTCAGTTGGAAAGCTTTTAAAACCCACGAAGTTGATCAAAGGTTTAACAACATTTTAAACCGTGCATTAACTTTTGCTGCTGGCCTTCCATTGGCTTTGGAAGTTATAGGTTCCAGCTTGTTTGGAAAAAGTGTAGATGAATGGAAATCTGCATTAGACCGGTATGAAAGAATCCCTATAAAAGAGATCCAAAAGAAACTTGAAGTAAGCTTTGATGCTTTGGAGGAAGAAGAGAAGAGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGATATCTAATGACAAAGGTCCAAGATATACTTTGTGCTCATCATGGTCACTGCATGAAATATCATATTCAAGTGTTGATTCAAAAGTCTCTCATAAAGATTGGTTATGATTGGCATAGTAAGGAGGAGGTGGTGACTCTACATGACTTGATAGAGGACATGGGTAAAGAAATTGTCCGACGGGAATCACCGAATAATCCTGGGGAACGTAGTAGGTTATGGGTCGATGAAGATATAGTTGATGTCTTAGAAGAAGATAAGGTGAAATATCTTGCCCCTATACCAAGTAGCATTGTCAATATGCAAGAACTAGCTGTGATTTGGGGTTTCGATTGGGAATTGGGTTCATTGCGAGAAGTGGGCTCAATGGTGTCTTCTTCAAACGTAGAATGTCTCTTTCTCTTGGACTGCAACGTGTCAGATGAATTTCTTGCAATTGGTCTCACCTGGTTTGCTAAAGTTAAAAAATTATACCTACCTCGCAATAATTTGACAATTATTCCTGAATGCATCAAAGAATGTCGCCTTTTAACGACGCTTAATATGGATTATTGCAAGAGTCTTCGGGAAATTGGAGGGATTCCGCCAAAATTAAGGCGTTTCTCTGCAAGATACTGCTCATCCTTGACTTCCGAGTCTATAAGCAAGTTAACGGATCAGAAACTTCATGAGGCTGCAAACACCAGGTTTCGTTTGCCTGGAACTATAGGGATTCCAGAGTTGTTTGAGCACATCAACAGCAGGGGACGGTCAATTTCATTCTGGTTTCGTAACAAGTTCCCTACCATAGCTATCTGTCTTGTTAATGTTACCTACTATCGGGTTACCGTGGTCATCAATGGCAACAACAGTGGTTTCATAGCTCCTTGGCTTCGTATGTCACCTAATCATACATATCTTTTTGGTATGCAACCAAAAGATATTCATCGGGATGGAGTGACTTTAAAAAATGAATGGAACCGTGTGAAGGTTACATGTCGATCCTTCCGAAAACGTGATAATAATGGCGAAATAGGAATCCATGTATTCAAAGAGAAAAATAGCAAGGAGGATATTCTATTCAGTAATCCTTGTCCTGAATCCAATTCAGAGGATGGTGACATTGGAGATGAAGAAACATTGTATGATTCTTACAGTGAAGACTCATTGTATGATTGTCACAGTGAAGACTCATTTTACGATTCTGACAGTGAAGACTCAGAGGATACAAGAGAAAGAGGACTTGATTCTGACGGGGAAGAATCACTCGTTCAGAGGAAGAGAAGGAAAACACATGGGTAG 2640 0.4034 MASSSSFLYDVFLSFRGTDTRYGFTGNLNKALRDKGISTFIDDKELQKGGEITTSLLEAIQQSRIAIIVLSANYASSSFCLEELSNIIHHINNIESRKVFPIFYKVDPSHVRKQTETFGKALVDHEEKFKANKDKLEDNMKRLQKWRTALEQVANLSGFHFKDGDEYEHKFIENIVKEVSKNIKRVPLPFANHPIGLESRVEEVVKLLMDAGSNDGVDMVGIHGIGGVGKTTLVLAVYNFVAENFEGLCFLHNVRENSNTHGGLRHLQEILLGEMFGGGEIKLASVLQGSSEIQRRLRVKKVLLILDDVDKPEQLQALAGSPDWFGPGSRVIITTRDKQLLACHEVKKTYEVNGLNGKDALKLLSWKAFKTHEVDQRFNNILNRALTFAAGLPLALEVIGSSLFGKSVDEWKSALDRYERIPIKEIQKKLEVSFDALEEEEKSVFLDIACCFKGYLMTKVQDILCAHHGHCMKYHIQVLIQKSLIKIGYDWHSKEEVVTLHDLIEDMGKEIVRRESPNNPGERSRLWVDEDIVDVLEEDKVKYLAPIPSSIVNMQELAVIWGFDWELGSLREVGSMVSSSNVECLFLLDCNVSDEFLAIGLTWFAKVKKLYLPRNNLTIIPECIKECRLLTTLNMDYCKSLREIGGIPPKLRRFSARYCSSLTSESISKLTDQKLHEAANTRFRLPGTIGIPELFEHINSRGRSISFWFRNKFPTIAICLVNVTYYRVTVVINGNNSGFIAPWLRMSPNHTYLFGMQPKDIHRDGVTLKNEWNRVKVTCRSFRKRDNNGEIGIHVFKEKNSKEDILFSNPCPESNSEDGDIGDEETLYDSYSEDSLYDCHSEDSFYDSDSEDSEDTRERGLDSDGEESLVQRKRRKTHG 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi593g00011 879 Gene3D - 7 179 IPR035897 -
Gabi593g00011 879 Gene3D - 354 438 IPR042197 -
Gabi593g00011 879 ProSiteProfiles TIR domain profile. 7 183 IPR000157 GO:0007165
Gabi593g00011 879 Gene3D - 180 350 IPR027417 -
Gabi593g00011 879 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 159 IPR035897 -
Gabi593g00011 879 Pfam TIR domain 9 183 IPR000157 GO:0007165
Gabi593g00011 879 Coils Coil 423 443 - -
Gabi593g00011 879 FunFam Disease resistance protein (TIR-NBS-LRR class) 5 185 - -
Gabi593g00011 879 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 676 IPR044974 GO:0006952
Gabi593g00011 879 SUPERFAMILY "Winged helix" DNA-binding domain 425 537 IPR036390 -
Gabi593g00011 879 SMART till_3 8 156 IPR000157 GO:0007165
Gabi593g00011 879 MobiDBLite consensus disorder prediction 841 879 - -
Gabi593g00011 879 MobiDBLite consensus disorder prediction 841 873 - -
Gabi593g00011 879 SUPERFAMILY RNI-like 546 672 - -
Gabi593g00011 879 Gene3D Ribonuclease Inhibitor 540 682 IPR032675 -
Gabi593g00011 879 Pfam NB-ARC domain 198 435 IPR002182 GO:0043531
Gabi593g00011 879 Coils Coil 126 153 - -
Gabi593g00011 879 PRINTS Disease resistance protein signature 219 234 - -
Gabi593g00011 879 PRINTS Disease resistance protein signature 625 641 - -
Gabi593g00011 879 PRINTS Disease resistance protein signature 296 310 - -
Gabi593g00011 879 PRINTS Disease resistance protein signature 389 403 - -
Gabi593g00011 879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 448 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi593g00011 Gabi-Chr593 107303 112068 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi593g00011 195 538 WRKY Transcription Factor Family AT5G45050 34.483 6.98e-46 177