Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi593g00001 ATGGAGAAAGGTTCGGTTAATCGTTTCCATAAAAGGAAAAGATCTAGCAGCAATCCAGTCCAAAACCATAAACGACGCAGGATTACTACTATTGAATATGAATACATCAGACAGCCTCTGCTGGAAGATGAAGAAGAAGAACCGGTTGAGGAGGAAGAGGAAGAGAAAGATCCGGAAGAGGAAGGAAAATGTTGTGAAATTGAGTTAGAAGACTATGTGCATTGCCAAGGGAGTGCAAATCATGACGAGGATGTTGGAGAAGAGAATCCTATGGAAGATAATGAAGCAACATCTAAGTTTAACGGCATAGACCCTATTTCTGCCACCCTTTCCGACCTTAAAGTCCTTGATTGCTGCAGCTGCTGTCAACCATTGACTATTCCTGTCTTCCAGTATCATTCTGATACATCACTAGGAATTGAACTTAATCTTAGATTCTTAGTCAAACAAGCTGTTGTGCATGCTTTTAATCCTGCAATACAGTGCGAGAAAGGGCATTTTGCTTGCTTTACCTGTTGTGCTCTTGGAAGGGAGTGTCTTGAGTGCTCATCTCGCATTCCTTACAACCGTTGCAGAGCTATTGAGAAAGTGTTGGAATCTATTAACATATCATGCCTTAATGCAAAATATGGTTGCAAAGAGACATTCAGTTACAGTGAAAGGAATAACCATGAGAAGAAATGTATCCACATTCCATGTTTCTGCCCACACAAAGGTTGTGATTTTGTTGCCTCATCAAAGTTGTTATCACTCCACTTCAACAATAAACATAAAACTTCTGGAATCCAATTTTTATACAATCACACTTTCCATGTATCCGTGAATCCTTATGATGAATTCCTTGTTCTTCAAGAGCAAACATATGGAAATATGTTTATTCTCAAAAACAATGTTGTTGAGAATATGGCAAATGTGGTCACTATTAGCTGCATGGGGCCTAACTCTTCTCAGCCAGGGTATGCTTATGTTATAGTCGCCAAGTCTCAGGGATGCTGTCTAATGTTGAAGTCTTTTACCAAGAACATTCAAAGGGGCATTGCAGATATTCCTTCATCAGGGTTCCTTGTGATTCCATTTGACCGTTCTGATAATTATGCATCTCTCCATCTGGAGATTTGCATAAGAAAAAGAAAGAATGCTTCACACATTGCAGAGTGGGAAGGTCCTTAG 1170 0.3974 MEKGSVNRFHKRKRSSSNPVQNHKRRRITTIEYEYIRQPLLEDEEEEPVEEEEEEKDPEEEGKCCEIELEDYVHCQGSANHDEDVGEENPMEDNEATSKFNGIDPISATLSDLKVLDCCSCCQPLTIPVFQYHSDTSLGIELNLRFLVKQAVVHAFNPAIQCEKGHFACFTCCALGRECLECSSRIPYNRCRAIEKVLESINISCLNAKYGCKETFSYSERNNHEKKCIHIPCFCPHKGCDFVASSKLLSLHFNNKHKTSGIQFLYNHTFHVSVNPYDEFLVLQEQTYGNMFILKNNVVENMANVVTISCMGPNSSQPGYAYVIVAKSQGCCLMLKSFTKNIQRGIADIPSSGFLVIPFDRSDNYASLHLEICIRKRKNASHIAEWEGP 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi593g00001 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 253 IPR013083 -
Gabi593g00001 389 ProSiteProfiles Zinc finger SIAH-type profile. 200 258 IPR013010 GO:0008270
Gabi593g00001 389 Pfam Seven in absentia protein family 190 360 IPR018121 GO:0005737|GO:0006511|GO:0007275
Gabi593g00001 389 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 81 377 IPR044286 -
Gabi593g00001 389 MobiDBLite consensus disorder prediction 39 62 - -
Gabi593g00001 389 MobiDBLite consensus disorder prediction 1 62 - -
Gabi593g00001 389 SUPERFAMILY TRAF domain-like 200 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi593g00001 Gabi-Chr593 1767 3985 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi593g00001 156 358 C3H Transcription Factor Family AT2G41980 26.027 1.76e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi593g00001 K04506 - qsa:O6P43_009323 256.914