Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi591g00008 ATGGTTTCAACGAGACGCAGTGGATCTCTTTCTGCAAACAATACAAAAAGATCTTCCTCCTCAGAAGATAAGCCTCCTTCACCTAAACGTCAAAAGGTTGACAATGGCGTTTCGTCGGAGAAACCGGCGCCGGTGGCGGATAATTCCAAGAAAACATGTACTCCGGAGCCTGTCCCTGATCCCGGAGAATGTGGCTCCCGCGATGCTCAGATCGCCGGAGCGGGTGCCGCTGATGGTGTGAGTTCCGGCAAGGGCGATGCTACGCCTGCTGTGGCTGTGGCGGTGCCGATTGCTGATGCCACATGTCCGTCGTTTTCTTCATGGAGTATATATCAGAAACAACCCTGGTGCAGGTTCTTGACGCAGTCTGCACAGAATCCAAATGTTCATGTTTGCACTCCGAATTTCACAATTGGTTCTAGTAGAAATTGCAACTTGGCACTGAATGATCAAACTATAAGTGGGAATTTATGTAAGATCAAGCATACCCAGAGCGGGGGATGTGCTGTAGCTGTGCTAGAAAGTACGGGCAGCAAAGGATCTGTGCTAGTAAATGGGACGCTTGTCAAGAAGAATACCAGCTGTGTGCTTAACTCGGGTGATGAGGTGGTTTTTGGCTCGCTGGGAAATCATTCTTATATTTTCCAGCAACTGAATACTGAGGTTGCAGTTAGGGGTGCAGAAGTTCAGAGTGGTGATGGGAAAATTCTGCAGTTTGAAAGGAGAAGTGGAGACCCTTCAGCTGTGGCTGGGGCCTCTATTTTGGCTTCTCTTTCTAACCTCAGACAGGACCTTACCCAACGGAAATCACCATCTCAGACCTCCAGTAAACCTCACCAAGGTGCTGATGTCTCTAGTCATTCTGTTCTTCATGATGATACAGAAATTGAGCTTGATGGCTCAGAATCAGCTCCAAATATACGGAGTGATAAAGGAGGTGATGTTGGAGCAAGCGACAAGAATTCAACAATGGATTGCGACCTAGATGCTGGCACAGAGGCAGGCAATGTAAAATTTTATGGGGTGAATGATTCCCTAAGGCCTTTCTTCAGGATCTTAGCTCGATCTAGTTGTAAACTCAAATTGAGCAAAAGTATCTGTAAACAGGTATTGGAAGAAAGAAATGGGACACGGGATACGCGAGCCGCATCGTCTTCAGGTACATCTGTGCGCTGTGCAGTGTTTAAAGAAGATGTTCGTGCTGCAATACTGGATGGAAAAGAAATGGATGTGTCTTTTGACAACTTCCCATACTATTTAAGTGAGAATACAAAAAATGTCCTGGTGGCAGCTTGCTTGTTACACCTCAGGCATAAAGGACATGAAAAATACACCGGAGATCTTACAACCATAAACCCTCGTATTTTACTCTCAGGACCTGCAGGGTCAGAGATATATCAGGAGATGTTGGCAAAAGCACTTGCAAAATACTTTGGAGCTAAGTTGCTCATATTTGATAGCCATTTGCTTTTGGGTGGTTTATCTTCCAAGGAATCTGAGCTACTCAAAGATGGATTTAATGCTGAAAAATCTTGCAGCTACCCCAAACGAAGTCCTACAACTACTAACTTGGCTAGGGCCATGGACCCGTTAGCTAGTGAAACAGAAACACATAGCTCTTTAAATGCACCTGCATCATATGGCCACGAGTCTCAACCTAAGTTGGAAACTGATAACATACCATCTACCTCTGGAACAGCTAAAAATTGCTTGTTTAAATTAGGTGATAGGGTTAAATTTAGCTGTTCATCATCTTGTGGCTTGTACCAAACATCTTCAAGGGGTCCACCTAGTGGAAGTCGGGGGAAGGTTGTCTTACTATTTGATGATAATCCATTGTCTAAAATTGGTGTGAGATTTGATAAACCGATACCTGATGGAGTTGATCTTGGAGGGGCCTGTGAGGGAGGTCAAGGATTTTTCTGCAATGTCACTGATCTTCGATTGGAAAACAGTGGTGTGGAAGAACTGGACAAATTACTTATTAATTTGTTGTTTGAGGTTGTTTTTAGCGAGAGCAGAAGCTCACCGTTCATTTTGTTCATGAAAGATGCTGAGAAGTCTATAGTTGGAAATGGAGATCCAGTTTCATTTAAAAGTAGGCTTGAAAAGCTTCCAGACAGTGTGGTGGTAATAGGTTCACACACTCATACTGACAGTCGAAAGGAGAAGTCGCACCCTGGTGGTTTGCTATTTACAAAATTCGGTAGCAATCAGACTGCCCTTCTTGACTTGGCTTTCCCGGATAGTTTTGGACGATTGCATGACAGGGGGAAGGAAGTCCCAAAGCCAAACAAAACTTTAACTAAGCTTTTCCCAAATAAAATTACAATCCACATGCCCCAGGATGAGGCACTTCTAGCATCTTGGAAGCAGCAACTGGATCGAGATGTTGAGACTCTTAAAATACAAGGAAATTTACATCACTTGCGCATGGTTTTGGGCCGTTGTGGAATGGAATGTGAAGGACTTGAGACCTTGTGCATTAAGGATCAGACACTTACAAATGAAATTTCAGAGAAGATAGTTGGGTGGGCTTTAAGCCACCACCTCATGCAGAATTCTGAAGCTGATCCTGATTCAAAACTTGTATTGTCGAGTGAGAGCATCCAGTATGGAATTGGAATCTTGCAGTCTATCCAGAATGAGTCCAAGAGTCTGAAGAAGTCTCTTAAGGATGTTGTAACAGAAAATGAGTTTGAAAAGAGGCTTTTGGCTGATGTTATTCCACCTAGTGACATTGATGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTCAAGGATACACTGAAGGAGTTGGTGATGCTTCCTTTACAGAGGCCTGAGCTGTTTTGCAAGGGGCAATTAACCAAGCCATGCAAGGGTATCCTATTGTTTGGTCCCCCTGGAACAGGTAAAACAATGCTTGCAAAAGCAATTGCTACCGAAGCAGGTGCAAACTTCATCAACATTTCCATGTCAAGCATTACGTCTAAGTGGTTTGGTGAGGGTGAGAAATACGTGAAAGCTGTTTTCTCTCTGGCGAGTAAAATTGCTCCTAGTGTTATATTCGTTGACGAAGTTGACAGCATGTTGGGTCGGAGGGAAAATCCAGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGCTTACGGACAAAGGATACTGAGCGAGTTCTTGTGCTTGCAGCCACTAACAGGCCTTTTGACCTAGATGAAGCTGTTGTAAGGAGGCTGCCCCGAAGATTGATGGTGAATTTGCCAGATGCTCCTAATAGAGGAAAAATATTGAAAGTCATACTGGCAAAGGAGGAATTGTCTTGTGATGTTGATTTGGATGCAGTTGCAAGCATGACTGATGGATATTCTGGAAGTGATCTTAAGAATTTGTGTGTAACTGCTGCACACCGTCCAATTAAAGAGATATTAGAAAAGGAAAAAAAGGAACGTGTTCTTGCTCTAGCAGAAGGTCGACCTGCTCCAGCATTATGTGGCAGTGGGGACATCCGATCTTTAAACATGGAAGACTTTAAATATGCTCATCAACAGGTATGTGCAAGTGTTTCCTCTGAATCAGTAAATATGACTGAGCTTTTACAGTGGAACGAACTATATGGCGAAGGTGGTTCAAGAATAAAGAAAGCACTCAGCTACTTCATGTGA 3666 0.4362 MVSTRRSGSLSANNTKRSSSSEDKPPSPKRQKVDNGVSSEKPAPVADNSKKTCTPEPVPDPGECGSRDAQIAGAGAADGVSSGKGDATPAVAVAVPIADATCPSFSSWSIYQKQPWCRFLTQSAQNPNVHVCTPNFTIGSSRNCNLALNDQTISGNLCKIKHTQSGGCAVAVLESTGSKGSVLVNGTLVKKNTSCVLNSGDEVVFGSLGNHSYIFQQLNTEVAVRGAEVQSGDGKILQFERRSGDPSAVAGASILASLSNLRQDLTQRKSPSQTSSKPHQGADVSSHSVLHDDTEIELDGSESAPNIRSDKGGDVGASDKNSTMDCDLDAGTEAGNVKFYGVNDSLRPFFRILARSSCKLKLSKSICKQVLEERNGTRDTRAASSSGTSVRCAVFKEDVRAAILDGKEMDVSFDNFPYYLSENTKNVLVAACLLHLRHKGHEKYTGDLTTINPRILLSGPAGSEIYQEMLAKALAKYFGAKLLIFDSHLLLGGLSSKESELLKDGFNAEKSCSYPKRSPTTTNLARAMDPLASETETHSSLNAPASYGHESQPKLETDNIPSTSGTAKNCLFKLGDRVKFSCSSSCGLYQTSSRGPPSGSRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLENSGVEELDKLLINLLFEVVFSESRSSPFILFMKDAEKSIVGNGDPVSFKSRLEKLPDSVVVIGSHTHTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNKTLTKLFPNKITIHMPQDEALLASWKQQLDRDVETLKIQGNLHHLRMVLGRCGMECEGLETLCIKDQTLTNEISEKIVGWALSHHLMQNSEADPDSKLVLSSESIQYGIGILQSIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIDVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNRGKILKVILAKEELSCDVDLDAVASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERVLALAEGRPAPALCGSGDIRSLNMEDFKYAHQQVCASVSSESVNMTELLQWNELYGEGGSRIKKALSYFM 1221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi591g00008 1221 MobiDBLite consensus disorder prediction 1 69 - -
Gabi591g00008 1221 SUPERFAMILY SMAD/FHA domain 101 215 IPR008984 GO:0005515
Gabi591g00008 1221 Gene3D - 1089 1183 - -
Gabi591g00008 1221 Coils Coil 877 897 - -
Gabi591g00008 1221 Pfam ATPase family associated with various cellular activities (AAA) 957 1086 IPR003959 GO:0005524|GO:0016887
Gabi591g00008 1221 SMART AAA_5 953 1090 IPR003593 GO:0016887
Gabi591g00008 1221 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 395 1220 - -
Gabi591g00008 1221 ProSitePatterns AAA-protein family signature. 1060 1079 IPR003960 GO:0005524|GO:0016887
Gabi591g00008 1221 Pfam AAA+ lid domain 1110 1145 IPR041569 -
Gabi591g00008 1221 Pfam FHA domain 137 206 IPR000253 GO:0005515
Gabi591g00008 1221 MobiDBLite consensus disorder prediction 22 36 - -
Gabi591g00008 1221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 915 1196 IPR027417 -
Gabi591g00008 1221 MobiDBLite consensus disorder prediction 1 21 - -
Gabi591g00008 1221 Gene3D - 915 1196 IPR027417 -
Gabi591g00008 1221 CDD RecA-like_ATAD1 920 1086 - -
Gabi591g00008 1221 CDD FHA 118 216 - -
Gabi591g00008 1221 MobiDBLite consensus disorder prediction 264 283 - -
Gabi591g00008 1221 Gene3D - 115 224 - -
Gabi591g00008 1221 MobiDBLite consensus disorder prediction 264 320 - -
Gabi591g00008 1221 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 915 1090 - -
Gabi591g00008 1221 MobiDBLite consensus disorder prediction 531 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi591g00008 Gabi-Chr591 29231 57270 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi591g00008 952 1158 Calmodulin-binding Proteins AT3G56690 36.019 1.15e-30 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi591g00008 - - gmx:100816731 2044.24