Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi591g00006 ATGGTTTCAACGAGACGCAGTGGATCTCTTTCTGCAAACAATACAAAAAGATCTTCCTCCTCAGAAGATAAGCCTCCTTCACCTAAACGTCAAAAGGTTGACAATGGCGTTTCGTCGGAGAAACCGGCGCCGGTGGCGGATAATTCCAAGAAAACATGTACTCCGGAGCCTGTCCCTGATCCCGGAGAATGTGGCTCCCGCGATGCTCAGATCGCCGGAGCGGGTGCCGCTGATGGTGTGAGTTCCGGCAAGGGCGATGCTACGCCTGCTGTGGCTGTGGCGGTGCCGATTGCTGATGCCACATGTCCGTCGTTTTCTTCATGGAGTATATATCAGAAACAACCCTGGTGCAGGTTCTTGACGCAGTCTGCACAGAATCCAAATGTTCATGTTTGCACTCCGAATTTCACAATTGGTTCTAGTAGAAATTGCAACTTGGCACTGAATGATCAAACTATAAGTGGGAATTTATGTAAGATCAAGCATACCCAGAGCGGGGGATGTGCTGTAGCTGTGCTAGAAAGTACGGGCAGCAAAGGATCTGTGCTAGTAAATGGGACGCTTGTCAAGAAGAATACCAGCTGTGTGCTTAACTCGGGTGATGAGGTGGTTTTTGGCTCGCTGGGAAATCATTCTTATATTTTCCAGCAACTGAATACTGAGGTTGCAGTTAGGGGTGCAGAAGTTCAGAGTGGTGATGGGAAAATTCTGCAGTTTGAAAGGAGAAGTGGAGACCCTTCAGCTGTGGCTGGGGCCTCTATTTTGGCTTCTCTTTCTAACCTCAGACAGGACCTTACCCAACGGAAATCACCATCTCAGACCTCCAGTAAACCTCACCAAGGTGCTGATGTCTCTAGTCATTCTGTTCTTCATGATGATACAGAAATTGAGCTTGATGGCTCAGAATCAGCTCCAAATATACGGAGTGATAAAGGAGGTGATGTTGGAGCAAGCGACAAGAATTCAACAATGGATTGCGACCTAGATGCTGGCACAGAGGCAGGCAATGTATTGGAAGAAAGAAATGGGACACGGGATACGCGAGCCGCATCGTCTTCAGGTACATCTGTGCGCTGTGCAGTGTTTAAAGAAGATGTTCGTGCTGCAATACTGGATGGAAAAGAAATGGATGTGTCTTTTGACAACTTCCCATACTATTTAAGTGAGAATACAAAAAATGTCCTGGTGGCAGCTTGCTTGTTACACCTCAGGCATAAAGGACATGAAAAATACACCGGAGATCTTACAACCATAAACCCTCGTATTTTACTCTCAGGACCTGCAGGGTCAGAGATATATCAGGAGATGTTGGCAAAAGCACTTGCAAAATACTTTGGAGCTAAGTTGCTCATATTTGATAGCCATTTGCTTTTGGGTGGTTTATCTTCCAAGGAATCTGAGCTACTCAAAGATGGATTTAATGCTGAAAAATCTTGCAGCTACCCCAAACGAAGTCCTACAACTACTAACTTGGCTAGGGCCATGGACCCGTTAGCTAGTGAAACAGAAACACATAGCTCTTTAAATGCACCTGCATCATATGGCCACGAGTCTCAACCTAAGTTGGAAACTGATAACATACCATCTACCTCTGGAACAGCTAAAAATTGCTTGTTTAAATTAGGTGATAGGGTTAAATTTAGCTGTTCATCATCTTGTGGCTTGTACCAAACATCTTCAAGGGGTCCACCTAGTGGAAGTCGGGGGAAGGTTGTCTTACTATTTGATGATAATCCATTGTCTAAAATTGGTGTGAGATTTGATAAACCGATACCTGATGGAGTTGATCTTGGAGGGGCCTGTGAGGGAGGTCAAGGATTTTTCTGCAATGTCACTGATCTTCGATTGGAAAACAGTGGTGTGGAAGAACTGGACAAATTACTTATTAATTTGTTGTTTGAGGTTGTTTTTAGCGAGAGCAGAAGCTCACCGTTCATTTTGTTCATGAAAGATGCTGAGAAGTCTATAGTTGGAAATGGAGATCCAGTTTCATTTAAAAGTAGGCTTGAAAAGCTTCCAGACAGTGTGGTGGTAATAGGTTCACACACTCATACTGACAGTCGAAAGGAGAAGTCGCACCCTGGTGGTTTGCTATTTACAAAATTCGGTAGCAATCAGACTGCCCTTCTTGACTTGGCTTTCCCGGATAGTTTTGGACGATTGCATGACAGGGGGAAGGAAGTCCCAAAGCCAAACAAAACTTTAACTAAGCTTTTCCCAAATAAAATTACAATCCACATGCCCCAGGATGAGGCACTTCTAGCATCTTGGAAGCAGCAACTGGATCGAGATGTTGAGACTCTTAAAATACAAGGAAATTTACATCACTTGCGCATGGTTTTGGGCCGTTGTGGAATGGAATGTGAAGGACTTGAGACCTTGTGCATTAAGGATCAGACACTTACAAATGAAATTTCAGAGAAGATAGTTGGGTGGGCTTTAAGCCACCACCTCATGCAGAATTCTGAAGCTGATCCTGATTCAAAACTTGTATTGTCGAGTGAGAGCATCCAGTATGGAATTGGAATCTTGCAGTCTATCCAGAATGAGTCCAAGAGTCTGAAGAAGTCTCTTAAGGATGTTGTAACAGAAAATGAGTTTGAAAAGAGGCTTTTGGCTGATGTTATTCCACCTAGTGACATTGATGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTCAAGGATACACTGAAGGAGTTGGTGATGCTTCCTTTACAGAGGCCTGAGCTGTTTTGCAAGGGGCAATTAACCAAGCCATGCAAGGGTATCCTATTGTTTGGTCCCCCTGGAACAGGTAAAACAATGCTTGCAAAAGCAATTGCTACCGAAGCAGGTGCAAACTTCATCAACATTTCCATGTCAAGCATTACGTCTAAGTGGTTTGGTGAGGGTGAGAAATACGTGAAAGCTGTTTTCTCTCTGGCGAGTAAAATTGCTCCTAGTGTTATATTCGTTGACGAAGTTGACAGCATGTTGGGTCGGAGGGAAAATCCAGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGCTTACGGACAAAGGATACTGAGCGAGTTCTTGTGCTTGCAGCCACTAACAGGCCTTTTGACCTAGATGAAGCTGTTGTAAGGAGGCTGCCCCGAAGATTGATGGTGAATTTGCCAGATGCTCCTAATAGAGGAAAAATATTGAAAGTCATACTGGCAAAGGAGGAATTGTCTTGTGATGTTGATTTGGATGCAGTTGCAAGCATGACTGATGGATATTCTGGAAGTGATCTTAAGAATTTGTGTGTAACTGCTGCACACCGTCCAATTAAAGAGATATTAGAAAAGGAAAAAAAGGAACGTGTTCTTGCTCTAGCAGAAGGTCGACCTGCTCCAGCATTATGTGGCAGTGGGGACATCCGATCTTTAAACATGGAAGACTTTAAATATGCTCATCAACAGGTATGTGCAAGTGTTTCCTCTGAATCAGTAAATATGACTGAGCTTTTACAGTGGAACGAACTATATGGCGAAGGTGGTTCAAGAATAAAGAAAGCACTCAGCTACTTCATGTGA 3567 0.4382 MVSTRRSGSLSANNTKRSSSSEDKPPSPKRQKVDNGVSSEKPAPVADNSKKTCTPEPVPDPGECGSRDAQIAGAGAADGVSSGKGDATPAVAVAVPIADATCPSFSSWSIYQKQPWCRFLTQSAQNPNVHVCTPNFTIGSSRNCNLALNDQTISGNLCKIKHTQSGGCAVAVLESTGSKGSVLVNGTLVKKNTSCVLNSGDEVVFGSLGNHSYIFQQLNTEVAVRGAEVQSGDGKILQFERRSGDPSAVAGASILASLSNLRQDLTQRKSPSQTSSKPHQGADVSSHSVLHDDTEIELDGSESAPNIRSDKGGDVGASDKNSTMDCDLDAGTEAGNVLEERNGTRDTRAASSSGTSVRCAVFKEDVRAAILDGKEMDVSFDNFPYYLSENTKNVLVAACLLHLRHKGHEKYTGDLTTINPRILLSGPAGSEIYQEMLAKALAKYFGAKLLIFDSHLLLGGLSSKESELLKDGFNAEKSCSYPKRSPTTTNLARAMDPLASETETHSSLNAPASYGHESQPKLETDNIPSTSGTAKNCLFKLGDRVKFSCSSSCGLYQTSSRGPPSGSRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLENSGVEELDKLLINLLFEVVFSESRSSPFILFMKDAEKSIVGNGDPVSFKSRLEKLPDSVVVIGSHTHTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNKTLTKLFPNKITIHMPQDEALLASWKQQLDRDVETLKIQGNLHHLRMVLGRCGMECEGLETLCIKDQTLTNEISEKIVGWALSHHLMQNSEADPDSKLVLSSESIQYGIGILQSIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIDVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNRGKILKVILAKEELSCDVDLDAVASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERVLALAEGRPAPALCGSGDIRSLNMEDFKYAHQQVCASVSSESVNMTELLQWNELYGEGGSRIKKALSYFM 1188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi591g00006 1188 Gene3D - 115 224 - -
Gabi591g00006 1188 MobiDBLite consensus disorder prediction 1 69 - -
Gabi591g00006 1188 MobiDBLite consensus disorder prediction 498 528 - -
Gabi591g00006 1188 Pfam AAA+ lid domain 1077 1112 IPR041569 -
Gabi591g00006 1188 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 362 1187 - -
Gabi591g00006 1188 Gene3D - 882 1163 IPR027417 -
Gabi591g00006 1188 Pfam ATPase family associated with various cellular activities (AAA) 924 1053 IPR003959 GO:0005524|GO:0016887
Gabi591g00006 1188 Coils Coil 844 864 - -
Gabi591g00006 1188 MobiDBLite consensus disorder prediction 264 351 - -
Gabi591g00006 1188 ProSitePatterns AAA-protein family signature. 1027 1046 IPR003960 GO:0005524|GO:0016887
Gabi591g00006 1188 MobiDBLite consensus disorder prediction 22 36 - -
Gabi591g00006 1188 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 882 1057 - -
Gabi591g00006 1188 SMART AAA_5 920 1057 IPR003593 GO:0016887
Gabi591g00006 1188 MobiDBLite consensus disorder prediction 1 21 - -
Gabi591g00006 1188 Gene3D - 1056 1150 - -
Gabi591g00006 1188 CDD FHA 118 216 - -
Gabi591g00006 1188 MobiDBLite consensus disorder prediction 264 283 - -
Gabi591g00006 1188 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 882 1164 IPR027417 -
Gabi591g00006 1188 SUPERFAMILY SMAD/FHA domain 101 215 IPR008984 GO:0005515
Gabi591g00006 1188 CDD RecA-like_ATAD1 887 1053 - -
Gabi591g00006 1188 Pfam FHA domain 137 206 IPR000253 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi591g00006 Gabi-Chr591 29231 57270 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi591g00006 919 1125 Calmodulin-binding Proteins AT3G56690 36.019 1.37e-30 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi591g00006 - - gmx:100816731 1976.83