Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi58g00006 ATTGTATTATTTACCTCGGCAGTTCCCGTTTACAATGATAATTACTGCCCAAACTCCGCAATTTATCAATACAACATTACATTCCAAAGCAATCTCAAGATTCTCCTCTCAGATCTCACTTCCAACGCCTCCCAAGGCCCCGACGGCTACTACCTGACAAACATAGGCTTGGCGACCATAAACGTCGCCAGTGGCATCTTCCTCTGCCGTGGCGACGTCGCCTCTGCCATCTGTCAGGAGTGTGTCGCCGCCGTAGCCACAGAGATAGAATGCTGCTGCCACAACCAGACACAATCCATAATATGGTACGATGAGTGCACGTTGGGTTACACAAACAGGTACTTCAACTCTGTCAGCATCGTCCCAAGAGTGAACTTGTGGGATGACAAGAACATCTCCACCTCGGATTTGAAGTTCAATTTGGCCACAATTGAGGCTGCCACAAATAAGTTTTCCTATGAAAACAAAATAGGAAAAGGTGGATTTGGAGAGGTTTACAAGGGTGTTCTTTTAGATGGACGAGAAATAGCTGTAAAAAAACTCTCGCAAAGTTCACGACAAGGTGTAGTAGAATTCAAGAATGAGGTTTTGTTAATAGCAAAACTTCAACACAGAAATCTTGTGACATTATTAGGATTTTGCTTGGAAGAACAGGAGAAAATGCTTATTTATGAATTTGTGCCCAATAAAAGTCTTGATTACTTTTTATTCGATCCTGTAAAGCAAAGAGAGTTAGATTGGTCAAGACGCTACAAGATCATTGTTAGTATTGCTCGAGGAATTCTTTATCTCCATGAAGATTCCCAGCTTCTAATTATACATCGTGATCTCAAAGCTAGCAATGTTCTACTAGATGAAAACATGAACCCAAAGATTTCAGATTTTGGCATGGCAAAAATTTTCCAGGCAGATCAGACTCAAGTAAATACAGGAAGGATAGTTGGAACTTATGGTTACATGTCTCCAGAATATGCAATGCGTGGACAATTCTCTGTGAAATCAGATGTGTTCAGCTTTGGTGTCTTAGTTTTGGAGATTGTGAGTAGCAAGAAGAACACTGATTTTTGTCAAACTAAACATGCCGATGACCTCCTAAGCTATGCTTGGAAAAATTGGACGGAGCAAACACCTTTGGAGTTGCTGGATCCAACCCTGAGAGGTTCTTATTCAAGAAATGAAGTCATCAGATGCATCCATATTGGTTTATTGTGCATTCAGGAAAATCCATCCGACAGGCCTTCGATGGCAACTATTTCACTTATGTTGAACAGTTATTCAGTTACCTTGTCATTACCTCGAAAACCAGCATCTTTCCTGCATGGAAGAACACCTAACAGGCTAAAAAATGGGCTTCATTCTGATGAGTCCGCCACCAGTTCAATTTTGTGGTCTAATAATGAAGTATCCATTACTGAAGTATACCCTCGATAA 1431 0.4102 IVLFTSAVPVYNDNYCPNSAIYQYNITFQSNLKILLSDLTSNASQGPDGYYLTNIGLATINVASGIFLCRGDVASAICQECVAAVATEIECCCHNQTQSIIWYDECTLGYTNRYFNSVSIVPRVNLWDDKNISTSDLKFNLATIEAATNKFSYENKIGKGGFGEVYKGVLLDGREIAVKKLSQSSRQGVVEFKNEVLLIAKLQHRNLVTLLGFCLEEQEKMLIYEFVPNKSLDYFLFDPVKQRELDWSRRYKIIVSIARGILYLHEDSQLLIIHRDLKASNVLLDENMNPKISDFGMAKIFQADQTQVNTGRIVGTYGYMSPEYAMRGQFSVKSDVFSFGVLVLEIVSSKKNTDFCQTKHADDLLSYAWKNWTEQTPLELLDPTLRGSYSRNEVIRCIHIGLLCIQENPSDRPSMATISLMLNSYSVTLSLPRKPASFLHGRTPNRLKNGLHSDESATSSILWSNNEVSITEVYPR 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi58g00006 476 Pfam Salt stress response/antifungal 20 112 IPR002902 -
Gabi58g00006 476 ProSitePatterns Protein kinases ATP-binding region signature. 157 180 IPR017441 GO:0005524
Gabi58g00006 476 Pfam Protein tyrosine and serine/threonine kinase 153 419 IPR001245 GO:0004672|GO:0006468
Gabi58g00006 476 SUPERFAMILY Protein kinase-like (PK-like) 135 456 IPR011009 -
Gabi58g00006 476 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 120 472 - -
Gabi58g00006 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 272 284 IPR008271 GO:0004672|GO:0006468
Gabi58g00006 476 CDD STKc_IRAK 157 423 - -
Gabi58g00006 476 Gene3D Transferase(Phosphotransferase) domain 1 227 431 - -
Gabi58g00006 476 FunFam cysteine-rich receptor-like protein kinase 10 227 429 - -
Gabi58g00006 476 SMART serkin_6 151 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi58g00006 476 Gene3D Phosphorylase Kinase; domain 1 119 226 - -
Gabi58g00006 476 Gene3D - 10 115 IPR038408 -
Gabi58g00006 476 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 120 226 - -
Gabi58g00006 476 ProSiteProfiles Protein kinase domain profile. 151 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi58g00006 476 ProSiteProfiles Gnk2-homologous domain profile. 10 115 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi58g00006 Gabi-Chr58 131851 138094 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi58g00006 125 476 Receptor kinase-like Gene Family AT4G05200 61.972 4.08e-154 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi58g00006 PK_Tyr_Ser-Thr 2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi58g00006 - - gmx:113000776 572.392