Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi588g00102 ATGAACTCAGCCGTCACCAGAAAAGACATGGATCGGATCAAGGGTCCATGGAGCCCCGAAGAGGACGAGGCTCTGCAGAAGCTCGTGGAGAAGCACGGGCCCAGGAATTGGTCCCTGATAAGCAAGTCCATTCCGGGTCGCTCCGGCAAGTCCTGCAGGCTCCGCTGGTGCAATCAGCTATCTCCTCAGGTGGAGCACCGGGCCTTCACGCCAGAAGAGGACGACACTATAATCAGGGCCCATGCCCGTTTCGGCAACAAGTGGGCCACCATAGCCCGTCTCCTCTCGGGCCGAACCGACAACGCCATAAAGAACCACTGGAACTCCACCCTGAAGCGCAAGTGCGCTTCCATGATGATCGATGACCTTCAGCCTCTGAAGAGATCCGTGAGTGCAGGCGCTGCTCTTCCGATCTCCACCGGACTCTACATGAACCCGTCAACGCCCGGTAGCCCCTCTGGATCCGATATGAGCGAGTCCAGTGTACCAGTTGCGTCTTCGTCTCACGTGTACCGACCTGTTCCGAGGACCGGCGGGGTTCTACCACCCGTAGAAACGACGTCGTCTTCCAATGACCCTCCCACTTCATTATCCCTATCCCTTCCCGGCGTAGACTCTTCGGAGGTCTCGAATCGGGTAATCGAGCCAACTCATGCCCCGCCCCCACCATCAAATACTATCCCTTTCATGCCGATAATGGCGGCGCCGATGGCGGTGCCGGTGCCACAGCAGTTTCACGATCCCTCGGGATCGAAGCAGAAGGGGTTAGAGCCGTTTAATTTTAGTGCAGAGTTGCTGGGTGTGATGCATGATATGATAAGAAAGGAGGTGAGGAGTTATATGGCGGGGTTGGAACAGCAGAAGGGGATGTGTTTTCAGGCAGCTGATGATGGGTTTAGAAACGCTTCCGTGAAGCGTATTGGGATTAGCAGGGTCGATTCGTAA 945 0.5619 MNSAVTRKDMDRIKGPWSPEEDEALQKLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASMMIDDLQPLKRSVSAGAALPISTGLYMNPSTPGSPSGSDMSESSVPVASSSHVYRPVPRTGGVLPPVETTSSSNDPPTSLSLSLPGVDSSEVSNRVIEPTHAPPPPSNTIPFMPIMAAPMAVPVPQQFHDPSGSKQKGLEPFNFSAELLGVMHDMIRKEVRSYMAGLEQQKGMCFQAADDGFRNASVKRIGISRVDS 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi588g00102 314 PANTHER MYB PROTEIN-RELATED 14 185 - -
Gabi588g00102 314 FunFam MYB transcription factor 14 65 - -
Gabi588g00102 314 ProSiteProfiles Myb-like domain profile. 9 60 IPR001005 -
Gabi588g00102 314 MobiDBLite consensus disorder prediction 182 213 - -
Gabi588g00102 314 CDD SANT 68 111 IPR001005 -
Gabi588g00102 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Gabi588g00102 314 MobiDBLite consensus disorder prediction 141 167 - -
Gabi588g00102 314 FunFam Transcription factor MYB44 68 114 - -
Gabi588g00102 314 SMART sant 65 113 IPR001005 -
Gabi588g00102 314 SMART sant 13 62 IPR001005 -
Gabi588g00102 314 MobiDBLite consensus disorder prediction 1 21 - -
Gabi588g00102 314 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Gabi588g00102 314 MobiDBLite consensus disorder prediction 7 21 - -
Gabi588g00102 314 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Gabi588g00102 314 Pfam Myb-like DNA-binding domain 14 60 IPR001005 -
Gabi588g00102 314 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Gabi588g00102 314 Gene3D - 67 129 - -
Gabi588g00102 314 Gene3D - 13 65 - -
Gabi588g00102 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 115 IPR017930 -
Gabi588g00102 314 CDD SANT 16 58 IPR001005 -
Gabi588g00102 314 MobiDBLite consensus disorder prediction 139 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi588g00102 Gabi-Chr588 1348917 1350732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi588g00102 6 313 MYB Transcription Factor Family AT4G37260 51.039 1.57e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi588g00102 Myb_DNA-bind_6 1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi588g00102 K09422 - gmx:780556 454.521