Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi588g00097 ATGGCTCAACAACACTCTCTCTCATTCCTTCTCTGTGAAGAACAATGCACTTTCGAGGAAGATTCTAGGCCCAACAACGATGACCCAACACTGATAAAGCCCTCAACTTTACCTTTGATTTTGCTCCAAAGTGACTTGTTCTTGGAACACGATGACCTTCTCTCTCTAATCTCGAAAGAGAGAGGAACCCATTTTGTTGGGACTCTTCTTGAGGCTTCTCGTCGCGATGCTGTGAGCTGGATTTCAAGAGTTTCAGTGCTCTATGGTTTCACTGCTTTGACCACTGTTCTTGCTGTGAACTACTTTGATAGGTTCATAACGAGCCCAAGATTTCAGAGGGATAAGCCATGGATGACTCAGCTTACTGCAGTTGCGTGTTTGTCTTTGGCTGCCAAAATGGAAGAGACCCAAGTGCCACTTCTTTTGGACCTTCAAGTGGAGGAGTCAAAGTTTGTGTTTGAAGCAAAGACCATACAGAGAATGGAACTTCTAGTTTTGTCCACTCTTCAGTGGAGGATGAACCCTGTGACCCCAATTTCCTTCTTTCAACACATTGTTAGAAGGCTTGGTTTAAAGAACCGCTTGCATTGGGAATTCCTAGGGAGGTGCGAACGAGTTATTCTATGTGTCATTGCGGATTCAAGGGTTATGAGTTATCTTCCTTCTATATTGGCTGCTGCTACAATGATCCACGTTATTAAAGAGATTGAACCATTTAATGCATCGGAATACAGAAATACACTTCTGGGTTTACTCAAAATTAGTGAGGAACAAGTGAATGAGTGCTATAAACTCATGCTGAAACAATTAGTATGCTATGAAGGTATTTACAATCTTTGCCAGAAACGCAAACGCCTATCTGAACCAAGTAGCCCAGGTGGTGTCATTGATGCATCTTTCAGTAGTGACAGCTCAAATGATTCATGGACCGTGGCATCACCAATCTCACTTTCATTGGAGCCAGTGTTTAAGAGGAGCAAAGCTCAGGACCAGCAGTTGCGGTTGCCTTCAGTAAATCACGTGTATATTGATGTTCTAAATAGTCCTCGTTGA 1053 0.4292 MAQQHSLSFLLCEEQCTFEEDSRPNNDDPTLIKPSTLPLILLQSDLFLEHDDLLSLISKERGTHFVGTLLEASRRDAVSWISRVSVLYGFTALTTVLAVNYFDRFITSPRFQRDKPWMTQLTAVACLSLAAKMEETQVPLLLDLQVEESKFVFEAKTIQRMELLVLSTLQWRMNPVTPISFFQHIVRRLGLKNRLHWEFLGRCERVILCVIADSRVMSYLPSILAAATMIHVIKEIEPFNASEYRNTLLGLLKISEEQVNECYKLMLKQLVCYEGIYNLCQKRKRLSEPSSPGGVIDASFSSDSSNDSWTVASPISLSLEPVFKRSKAQDQQLRLPSVNHVYIDVLNSPR 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi588g00097 350 Gene3D - 71 174 - -
Gabi588g00097 350 PANTHER CYCLINS 66 271 IPR039361 -
Gabi588g00097 350 Gene3D - 175 264 - -
Gabi588g00097 350 CDD CYCLIN_AtCycD-like_rpt2 176 266 - -
Gabi588g00097 350 SMART Cyclin_C_2 176 304 IPR004367 -
Gabi588g00097 350 SMART cyclin_7 79 167 IPR013763 -
Gabi588g00097 350 SMART cyclin_7 180 268 IPR013763 -
Gabi588g00097 350 Pfam Cyclin, N-terminal domain 72 174 IPR006671 -
Gabi588g00097 350 FunFam D6-type cyclin 62 174 - -
Gabi588g00097 350 CDD CYCLIN_AtCycD-like_rpt1 74 171 - -
Gabi588g00097 350 SUPERFAMILY Cyclin-like 51 174 IPR036915 -
Gabi588g00097 350 FunFam CYCLIN D32 175 264 - -
Gabi588g00097 350 Pfam Cyclin, C-terminal domain 176 271 IPR004367 -
Gabi588g00097 350 SUPERFAMILY Cyclin-like 158 274 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi588g00097 Gabi-Chr588 1308694 1310097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi588g00097 7 340 Core Cell Cycle Gene Families AT5G67260 50.141 1.26e-105 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi588g00097 K14505 - gmx:100785030 491.886