Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi588g00095 ATGGAACCAGCATCTGCTGACTCTTCACCTCAGCCTACTGCTTCAGCTTCTAATACTGGACATAACTCCACCATATTATCTGCACAAATTGGCAGTGCTCATGATTCACCATCCTTGTTACCCACTTCTGGCATGTCATCGTGGGCAAGAAATCTGAAATTACCACAGTCCCTTGGGCTTGGTCAAGCACAACAAGACTCACAGACTGAAAATAATGGCATGTCAGCTTTTGCTCGCCTCACTGGTGGGCTTGGATTGCGAAATCCCTCTAATGAGACTAATCCAGTGAATTCAGGAGCCGAGCAACCTAATTTAATTGAATCCTTCACCAAAGGGTTGGTGGACTCTTCCAAGGGTGCAGTAAAGGCAATGCAGGTCAAAGCACGCCATATTGTCTCTCAAAATAAACGGAGATACCAGGAAGATGGATTTGATTTGGATCTGGCATACATCACTGAAAATATAATTGCTATGGGATTTCCGGGTGGTGATTTTAGCTCTGGAATTTTTGGATACATTGAGGGGTTCTACCGCAATCACATGGAAGAAGTCATCAAATTTTTTGAAACTCATCATGAGGGAAAGTACAAAGTATACAATCTTTGTTCGGAGAGGTTGTATGATGGATCACTATTCCAGGGGAAGGTTGCAAGTTTCCCATTTAGTGATCATAATTGCCCTTCTATTCAACTTATAGCATCATTTTGTCAAAGTGCATATTCATGGCTGAAGGAGGATATTCAAAATGTGGTGGTTGTTCATTGTAAAGCTGGTATGGGGAGGACAGGACTGATGATTTGTAGTCTTCTTTTGTTTCTTAAGTTCTTCCCAACTGCAGAGGAAGCCATTGATTACTTTAACCAGAAAAGATGTGTAGATGGAAAGGCTCTAGTTCTCCCTAGTCAGATCAGATATGTCAAATACTTTGAACGGACTTTAACACACTTCAAAGGAGAAGTCCAGCCTGGGCGAAGGTGCATGCTAAGAGGGTTTCGGCTTCACAAATGCCCTTATTGGGTTAGGCCATGCATTACAATATCTGATCATACTGGAATTCTTTTCACCACGAGAAAGCATCCCAAAACAAAGGATCTAATGCCAGAAGATTTCTGGATCAGTGCACCGAAGAAAGGAATTGTGGTCTTTGCACTACCAGGGGAGCCTGGTCTGACAGAGTTGGTTGGGGATTTCAAAATTCATTTTCAGGACCGACTGGGAGATTTCTACTGTTGGCTGAATACAGCAATGACAGAAAATCGAACAATTTTAGATGGCTCGGATCTGGATGGTTTTGACAAGAGAAAGATCCCTGCTCCAGGATTCCAGGTCGAAGTTGTGATGGTAGACTGTAACGGCACTCTACCTGCAAGGACAAAAGCCAATACTGCTAGCAAAGGACCTAATGGCAACACAAGCAATGTCCTAACCGGTGCAAGGCTGACATCTAATTCAAGTGAGACTAAGGTCCCTAGAAATGGAGATGAAGATGTGTTCTCGGACAGTGATGAAGAGGAGCCCCGGGATTCACAAAGCAGGAAAGCTGCAACTGAATACAAATTTATGGCACCTCATCAAGTATCTGAGGTCACTAAAGAACATGTAGGAATGTTGGCACATGCAACGGATCAGTTGTCACTACAGCATAAGGAACATACGCAAAACAATGCTTCTGAAGAATCAACTTCAGATAAACTTCATAAAATTCATGCAGGCCCCAACACCACTAACATGGAATCTGTAGGGGCAAGTGAAATCAAAGCAATTGCAGCAGATGCTTCCGTTTTTTCTTTTGGAGATGAAGATTTTGAAAGTGATTAA 1818 0.4274 MEPASADSSPQPTASASNTGHNSTILSAQIGSAHDSPSLLPTSGMSSWARNLKLPQSLGLGQAQQDSQTENNGMSAFARLTGGLGLRNPSNETNPVNSGAEQPNLIESFTKGLVDSSKGAVKAMQVKARHIVSQNKRRYQEDGFDLDLAYITENIIAMGFPGGDFSSGIFGYIEGFYRNHMEEVIKFFETHHEGKYKVYNLCSERLYDGSLFQGKVASFPFSDHNCPSIQLIASFCQSAYSWLKEDIQNVVVVHCKAGMGRTGLMICSLLLFLKFFPTAEEAIDYFNQKRCVDGKALVLPSQIRYVKYFERTLTHFKGEVQPGRRCMLRGFRLHKCPYWVRPCITISDHTGILFTTRKHPKTKDLMPEDFWISAPKKGIVVFALPGEPGLTELVGDFKIHFQDRLGDFYCWLNTAMTENRTILDGSDLDGFDKRKIPAPGFQVEVVMVDCNGTLPARTKANTASKGPNGNTSNVLTGARLTSNSSETKVPRNGDEDVFSDSDEEEPRDSQSRKAATEYKFMAPHQVSEVTKEHVGMLAHATDQLSLQHKEHTQNNASEESTSDKLHKIHAGPNTTNMESVGASEIKAIAADASVFSFGDEDFESD 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi588g00095 605 MobiDBLite consensus disorder prediction 81 102 - -
Gabi588g00095 605 ProSitePatterns Tyrosine specific protein phosphatases active site. 253 263 IPR016130 GO:0016311|GO:0016791
Gabi588g00095 605 ProSiteProfiles C2 tensin-type domain profile. 323 450 IPR014020 -
Gabi588g00095 605 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 114 566 - -
Gabi588g00095 605 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 150 316 IPR029021 -
Gabi588g00095 605 MobiDBLite consensus disorder prediction 457 514 - -
Gabi588g00095 605 SMART PTEN_C2_2 321 449 IPR014020 -
Gabi588g00095 605 CDD PTP_PTEN 147 311 IPR045101 GO:0016791
Gabi588g00095 605 MobiDBLite consensus disorder prediction 86 102 - -
Gabi588g00095 605 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 122 319 - -
Gabi588g00095 605 MobiDBLite consensus disorder prediction 457 488 - -
Gabi588g00095 605 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 251 290 IPR000387 GO:0016311|GO:0016791
Gabi588g00095 605 Gene3D Protein tyrosine phosphatase superfamily 122 319 IPR029021 -
Gabi588g00095 605 MobiDBLite consensus disorder prediction 1 25 - -
Gabi588g00095 605 ProSiteProfiles Phosphatase tensin-type domain profile. 137 316 IPR029023 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi588g00095 Gabi-Chr588 1260359 1266164 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi588g00095 27 605 Protein tyrosine phosphatase (PTP) family AT3G19420 61.409 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi588g00095 K01110 - gmx:100801622 1035.79