Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi588g00090 ATGGCCGTGGAGCTCGTGATGGGGTACAGGAATGACAATTTTGTTGCTAAAGCAGAAGAGAATGCTGTTCAAGAAGCTGCGTCTGGGTTAGAGAGCGTGGAGAAGCTCATCAGGTTGCTATCACAGACTCAGCAACAACAACAACAACAACAATACCAATCCTCTTCAACTTCAAAGTCTTCCATGGAAATTGAGATGGACTGCAGAGCTGTCGCTGACGTGGCTGTTTCCAAGTTCAAGAAGGTGATTTCACTTCTGGGTCGAACCAGAACCGGTCATGCTCGCTTCAGAAGAGCCCCTTTGGTTAACCAAAACCCTGAAATACAACCACGTCCTGAACCAAGAGTCTATCATGCGACGCCGTTGCAGCAGATCCCACCACCAACCCTTCATCCGCACCAAGCTCACAGTTTGATCCACAAAAATGGGGCCATTATTGAGTCCAAGACAATTAATTTCTCCTATTCCTCTGCTGCCAATTCATTCATCTCGTCACTCACCGGCGACACCGACGCTAAACAACCATGCTCGTCGTCGCCGGCGACACCTTTTCAGATCACGAATATCTCTCAGGTTTCCTCGGCGGGAAAGCCTCCACTTTCCTCGTCTTCGTTGAAGAGAAAGTGTAGCTCTGAGAATTTGGGTTCTGGCAAGTGCGGCAGTTCCTCTAGCCGCTGTCATTGTTCAAAGAAGAGAAAAATGAGGTTGAAGAGGGTGGTGAGGGTACCAGCAATAAGCTTGAAGATTGCTGATATTCCACCTGATGATTATTCTTGGAGGAAGTACGGACAGAAACCCATTAAAGGATCCCCTCATCCTAGGGGTTACTACAAGTGCAGCAGTGTCAGAGGGTGTCCAGCGCGCAAACACGTTGAGCGGGCTCTAGATGACCCAGCTATGCTGGTAGTTACCTATGAAAGCGAGCACAATCACTCCCTCTCTGCTTCCGAAGCTACTAATCTCATCCTAGAATCCTCTTAA 981 0.4852 MAVELVMGYRNDNFVAKAEENAVQEAASGLESVEKLIRLLSQTQQQQQQQQYQSSSTSKSSMEIEMDCRAVADVAVSKFKKVISLLGRTRTGHARFRRAPLVNQNPEIQPRPEPRVYHATPLQQIPPPTLHPHQAHSLIHKNGAIIESKTINFSYSSAANSFISSLTGDTDAKQPCSSSPATPFQITNISQVSSAGKPPLSSSSLKRKCSSENLGSGKCGSSSSRCHCSKKRKMRLKRVVRVPAISLKIADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPAMLVVTYESEHNHSLSASEATNLILESS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi588g00090 326 Pfam Plant zinc cluster domain 206 251 IPR018872 -
Gabi588g00090 326 FunFam WRKY transcription factor 65 237 314 - -
Gabi588g00090 326 SMART WRKY_cls 253 313 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi588g00090 326 Gene3D WRKY domain 242 314 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi588g00090 326 MobiDBLite consensus disorder prediction 169 221 - -
Gabi588g00090 326 Pfam WRKY DNA -binding domain 255 311 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi588g00090 326 ProSiteProfiles WRKY domain profile. 248 314 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi588g00090 326 SUPERFAMILY WRKY DNA-binding domain 251 313 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi588g00090 326 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 23 319 IPR044810 GO:0003700
Gabi588g00090 326 Coils Coil 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi588g00090 Gabi-Chr588 1216677 1218635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi588g00090 19 311 WRKY Transcription Factor Family AT2G24570 44.620 1.69e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi588g00090 WRKY 1.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi588g00090 - - qsa:O6P43_033850 450.669