Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi588g00086 ATGGAGGGTGAAGAAGGAAGAGGAGAGAGAGAGATAGGAACAGTCACTGTCACAGCCACAGCCACAGCCACAGCCACAAGGAAGAGAGGTGTTGGTGTTGTTGATGGTGAGAGAAGGTACAAAGGAATCAGGATGAGGAAGTGGGGCAAATGGGTCGCTGAAATTAGGGAACCCAATAAGCGTTCGAGGATTTGGCTTGGTTCTTATTCCACTCCCGTTGCCGCGGCGCGTGCTTACGACACCGCCGTTTTCTATCTCAGGGGACCCTCAGCCCGTCTTAACTTCCCGGAGCTTCTGGCTGGAGAAGGAGCCGCCGTCGTTGCCGGATGTGACATGTCGGCGGCTTCTATTAGGAAGAAAGCTACCGAAGTGGGTGCCAGAGTTGATGCCCTCCAGGCCACCCTCGACCACCACCACCGCCACCAACCTCATGTGGCGGCGCCTCCGGAGCTACTGTCGGGTGGCGGTGACGGTGGCTCCGGGGATTTTGCGGAACGGGTTGTTGACCTGAATAAGGTTCCCGAACCCGAGAGTTCGGACTGTGATTGGGATGTGAATTGA 561 0.5651 MEGEEGRGEREIGTVTVTATATATATRKRGVGVVDGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLAGEGAAVVAGCDMSAASIRKKATEVGARVDALQATLDHHHRHQPHVAAPPELLSGGGDGGSGDFAERVVDLNKVPEPESSDCDWDVN 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi588g00086 186 Gene3D AP2/ERF domain 38 97 IPR036955 GO:0003700|GO:0006355
Gabi588g00086 186 MobiDBLite consensus disorder prediction 137 186 - -
Gabi588g00086 186 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Gabi588g00086 186 FunFam Ethylene-responsive transcription factor 2 38 97 - -
Gabi588g00086 186 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 19 180 - -
Gabi588g00086 186 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Gabi588g00086 186 PRINTS Ethylene responsive element binding protein signature 78 98 IPR001471 GO:0003700|GO:0006355
Gabi588g00086 186 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Gabi588g00086 186 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Gabi588g00086 186 SUPERFAMILY DNA-binding domain 39 97 IPR016177 GO:0003677
Gabi588g00086 186 CDD AP2 39 98 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi588g00086 Gabi-Chr588 1170926 1172051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi588g00086 37 182 AP2-EREBP Transcription Factor Family AT3G50260 63.014 7.62e-56 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi588g00086 AP2 1.4e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi588g00086 K09286 - gmx:100783682 248.44