Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi588g00084 ATGTGGGATCTGAATGACTCCCCCGATCAGAGGAAGGACTACGAATCTGAAGGCTGTTCTTCCTTAAAGAATTCCATCGATTGTGATGATGATAAAGGCAAGAGGGTCGGATCTGTTTCCAATTCAAGCTCCTCTGCAGTGGCCATCGAAGATGGATCGGAAGAAGAAGAAGACGATGGAAGCAAAACGTTGAAGAAAAGAAGCAGTAAGATATTCGGGTTCTCAGTGACCCATGATGAGTCCATGGATAGTGACCACCTACCGGTCACCCGGCAGTTTTTCCCGTTGGAGGAGTCTGAGATGACCGTTCCCTCCGAGGGCGGTGCTAGTGGTGGTGGAAGCTCTTCCTTCCCTCGAGCTCACTGGGTAGGAGTGAAATTTTGTCAATCAGAAACACTCGGCGCCGGAAAATCAGTTGAAGCATCGCAGCCGATGAAGAAAAGCCGGCGAGGACCAAGGTCGCGGAGCTCACAGTATAGGGGAGTTACCTTTTACAGAAGAACAGGTCGATGGGAGTCTCATATATGGGATTGTGGAAAACAGGTATATCTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCGGCCATTAAGTTCCGGGGAGTAGAGGCAGACATAAACTTCAACATACAAGACTATGATGAAGACTTGAAGCAGATGAGCAATCTAACCAAGGAAGAGTTTGTGCACGTACTTCGCCGACAAAGCACTGGATTTCCGAGAGGAAGCTCCAAATATAGAGGTGTAACTTTGCATAAGTGTGGAAGATGGGAAGCTCGAATGGGCCAATTTTTAGGCAAAAAGTACGTTTATCTGGGTCTGTTTGACACCGAGATTGAAGCTGCAAGGGCGTATGACAAAGCAGCAATAAAATGTAATGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCATCTATGATAATGAGCTTAATTCTGAATCCTCAGGTAACGCTGCAGATCACAATTTGGATTTGAGTTTGGGCAATTCGAGCTCCAAACATAGCAACAGTCAAGCATTGGGGCATCACACCCCAAATGTTGCAACTGATCAGCATATGCCACCTGAATCCAATTGGCTGAATGGGGGAAGCAAGAATAAGCTGGTGAATATACTACCAAAACCATGTAATAGAAGCAACATGGAAGCCCATGCAAGCCCAAGGGATGGGCACGGGGAGAGTGAAGCCTTGCGGCTGCTAAGTCAAACTCACCTTCAATCTCCAGCCTCAAATGAAATGCATAGATATGGTCCTTACAGGTCACCTGGAGAGCCTCAAAGGCTTCACAATTTTGCCCATCTTCACCTACCAAATTTTCATGTTCCCAGCAGCAGCAGCAATGGAGGCCGTATTGGAAGTGATCTTTCATTATCAATGTCGGAGCAACAACAATGGCAACTGGGGCCTCCGCATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCGCAGATAAGACCCTCTCAAGGTTGGCTGCAGAAAAATCGGTTCCACACTTTAATGAGACCCTAG 1530 0.4732 MWDLNDSPDQRKDYESEGCSSLKNSIDCDDDKGKRVGSVSNSSSSAVAIEDGSEEEEDDGSKTLKKRSSKIFGFSVTHDESMDSDHLPVTRQFFPLEESEMTVPSEGGASGGGSSSFPRAHWVGVKFCQSETLGAGKSVEASQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIQDYDEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNSESSGNAADHNLDLSLGNSSSKHSNSQALGHHTPNVATDQHMPPESNWLNGGSKNKLVNILPKPCNRSNMEAHASPRDGHGESEALRLLSQTHLQSPASNEMHRYGPYRSPGEPQRLHNFAHLHLPNFHVPSSSSNGGRIGSDLSLSMSEQQQWQLGPPHLLATAAASSGFPPQIRPSQGWLQKNRFHTLMRP 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi588g00084 509 ProSiteProfiles AP2/ERF domain profile. 158 214 IPR001471 GO:0003700|GO:0006355
Gabi588g00084 509 SMART rav1_2 158 220 IPR001471 GO:0003700|GO:0006355
Gabi588g00084 509 SMART rav1_2 250 313 IPR001471 GO:0003700|GO:0006355
Gabi588g00084 509 PRINTS Ethylene responsive element binding protein signature 289 309 IPR001471 GO:0003700|GO:0006355
Gabi588g00084 509 PRINTS Ethylene responsive element binding protein signature 251 262 IPR001471 GO:0003700|GO:0006355
Gabi588g00084 509 MobiDBLite consensus disorder prediction 317 369 - -
Gabi588g00084 509 MobiDBLite consensus disorder prediction 136 159 - -
Gabi588g00084 509 SUPERFAMILY DNA-binding domain 157 215 IPR016177 GO:0003677
Gabi588g00084 509 SUPERFAMILY DNA-binding domain 249 309 IPR016177 GO:0003677
Gabi588g00084 509 MobiDBLite consensus disorder prediction 1 36 - -
Gabi588g00084 509 ProSiteProfiles AP2/ERF domain profile. 250 307 IPR001471 GO:0003700|GO:0006355
Gabi588g00084 509 MobiDBLite consensus disorder prediction 1 65 - -
Gabi588g00084 509 Gene3D AP2/ERF domain 157 216 IPR036955 GO:0003700|GO:0006355
Gabi588g00084 509 Gene3D AP2/ERF domain 249 308 IPR036955 GO:0003700|GO:0006355
Gabi588g00084 509 Pfam AP2 domain 158 206 IPR001471 GO:0003700|GO:0006355
Gabi588g00084 509 Pfam AP2 domain 249 298 IPR001471 GO:0003700|GO:0006355
Gabi588g00084 509 CDD AP2 158 216 IPR001471 GO:0003700|GO:0006355
Gabi588g00084 509 FunFam AP2-like ethylene-responsive transcription factor 249 309 - -
Gabi588g00084 509 FunFam AP2-like ethylene-responsive transcription factor 157 216 - -
Gabi588g00084 509 CDD AP2 249 309 IPR001471 GO:0003700|GO:0006355
Gabi588g00084 509 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 86 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi588g00084 Gabi-Chr588 1136315 1140136 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi588g00084 1 345 AP2-EREBP Transcription Factor Family AT4G36920 67.967 1.84e-137 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gabi588g00084 AP2 3.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi588g00084 K09284 - gmx:100786333 811.986