Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi588g00073 ATGGGGGATATGTATCAGTTTGAAGAGAATTTCTCTTCGTCTTCCTCCTCTCAAGACGAAATCTCTCTTTTTCTTCGTCAGATTCTCCTCCGTTCATCCTCTTCTTCGTCTATGCCTGGATCCTGCAACTCCAACGCTGTAAATGCACAACCTTCTTTCCCATCGTCATCGCTCCAAGATGGTAAGATCTCGGCCCTTGATTCCTCCGCTGGAGTAAACACTTGCAGTTCAATCAAGGGTCAGGGTGGTTCTGCTGCAAATGTGTCTTCCTCGTCTGTGGCAGTGAGCGAGAACGAAACTGATGATTATGATTGTGAAAGTGAGGAGGGTGTTGAAGCATTGGCTGAAGAAGTTCCAACAAAGTCTGCTCCTTCTAGGAGTTCATCAAAAAGAAGCAGAGCAGCTGAAGTTCATAATTTGTCTGAAAAGCGAAGGAGGAGTAGGATCAACGAGAAAATGAAGGCTTTGCAAAATCTAATTCCAAATTCTAACAAGACTGATAAGGCTTCAATGCTCGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAAGTACAGATGCTGTCAATGAGAAATGGATTGAGTTTGCATCCAATGTGCTTTCCTGAAGGCGTGCAGCCTCTGCAATTGTCTCGGATGAATATGGAGTTAAGTGAAGGAAACAGGTCTACCCCTTTAAACATGACAGCAACTCTGCCTCTGCACCAAGAGAACCCCTTGCACTATGCATCCAATCTACCTAACAAACACACTCTGCCAAATCAGTCATCAGGGCCCTATCCTTCATTTATTAACAACTCAGAAACTTCTTTTGGACTGGAATCCCGAATCCCAGCGCATATAAATCCTCTTCAACCCAGAAGATCTTCTGAGCCTATTCGTGGGGAAGACATGATGCAGCATCAGCAACCCAATGCAATCCATTCAGATACCAATCCATTAGGTGGTTCTCAAGGTGCGCATGTTTCTTCTTGTACAATTCAATTATCACTCTCCTTTAACACGCAAATATCTGAACCTAAGGACAACAACTCCTTACAAACATGCATTGCGGGAAGAGATCAGTCAGGAGGAGTGTTCATAAGAAATAACGAGCCCAACACTATTCTTACATCGCAGTTAAGTAGGTAA 1134 0.4365 MGDMYQFEENFSSSSSSQDEISLFLRQILLRSSSSSSMPGSCNSNAVNAQPSFPSSSLQDGKISALDSSAGVNTCSSIKGQGGSAANVSSSSVAVSENETDDYDCESEEGVEALAEEVPTKSAPSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMCFPEGVQPLQLSRMNMELSEGNRSTPLNMTATLPLHQENPLHYASNLPNKHTLPNQSSGPYPSFINNSETSFGLESRIPAHINPLQPRRSSEPIRGEDMMQHQQPNAIHSDTNPLGGSQGAHVSSCTIQLSLSFNTQISEPKDNNSLQTCIAGRDQSGGVFIRNNEPNTILTSQLSR 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi588g00073 377 CDD bHLH_AtPIF_like 136 195 IPR047265 -
Gabi588g00073 377 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 182 IPR011598 GO:0046983
Gabi588g00073 377 Pfam Helix-loop-helix DNA-binding domain 137 183 IPR011598 GO:0046983
Gabi588g00073 377 MobiDBLite consensus disorder prediction 79 145 - -
Gabi588g00073 377 FunFam Basic helix-loop-helix transcription factor 128 191 - -
Gabi588g00073 377 Coils Coil 172 192 - -
Gabi588g00073 377 MobiDBLite consensus disorder prediction 79 98 - -
Gabi588g00073 377 MobiDBLite consensus disorder prediction 99 113 - -
Gabi588g00073 377 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 14 305 IPR031066 -
Gabi588g00073 377 MobiDBLite consensus disorder prediction 131 145 - -
Gabi588g00073 377 SMART finulus 139 188 IPR011598 GO:0046983
Gabi588g00073 377 MobiDBLite consensus disorder prediction 33 62 - -
Gabi588g00073 377 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 193 IPR036638 GO:0046983
Gabi588g00073 377 Gene3D - 128 192 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi588g00073 Gabi-Chr588 993330 996423 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi588g00073 16 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 42.353 1.44e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi588g00073 HLH 4.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi588g00073 - - vum:124831111 448.743