Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi588g00070 ATGGGGGATAGAGAGGCTACAACCGGTAAGCGAAGGCCGAGAGGAGCGGAGGCCGCCGCCCGCAGCGAAGCCTTGGAGCGCCTGAAAGCCCGTCTCCGCGGAGGTCCCCGATCTGACGGCGGTGGACCCCAAATCAGGTTAGAAAACCCTATCTACGACTCTGTCCCCGAGGAAGAGTACAACGCCCTCGTTGCCAAGCGCCGCGAACAGGCACGTGCATTCATCGTTGACGATGACGGTCTCGGTTACGGTGACGAAGGCGAGGAAGAGGATTGGTCGAAAGCTGGCTTCACCCTCTCCTCCGACGAATCCGACGGCCAATCGGAGAGGCCCAAACGGAAGAAACTCGAGAAGAAAGATCCTCAGCCGAAACGACCCTCTTCTTCGCTCTCAGCTGCCGCCGCCATGATGGGCGGGCAGAGACTGTCTTCCATGTTCACTTCTTCTGTTTTCAAGAAAAGCAGAGACGACAAATCCTGCGACAGCATCGTCGATAATGTTATCGCGGAGTTTGCACCCGACGAGAACGATAAATTAAGGCGTAGAAGGGTGCAAGTGACTTCATTGTCTGGCGCCAACGATAAGCCGTCTTCTGATTTGATTGGATGTTCTTTTGTATCCGAAACTTCTGCAAAAGGAAATGGTGAATCCACTAGGGTTGTTGAGAATAATGATTGCGACATTGGGTTAGAGCAAAAGTGCGAAGAAGCTGTCATGGAAATTGAAGGGCATGGAAGTTCGGAAAATGACCAGTCATCAATGTTGCAAGTGGAACCGAGTTATGGGGATATAGTTGAGGAGGAAGTGGTTAAGGACATTGAAATAGAAGCAAAACCTGCTATGAAAAAAGAGGTGTTTACTTTGAATGCGAAAGTTGAACAAGAGGAGGACCCGGCATTGTGTGCAACTGCTGGTTGGCAAGCAGCGAAGAGTTGTGCTGGTGGAGGGGAGATCAATGTTGCTGATTCGAGGGATGCTTCGAATAACCAACAACAATCAGAGTTCAATCTGGAGGCTGATGGATCGCTACCTTTCTACATACTTGATGCCCACGAGGAGTTTTATGGAGCCAATATGGGCACCCTTTATTTGTTTGGGAAGGTCAAAGCAGGAAATTTGTATCAGAGTTGCTGTATTGTTGTGAAGAACATGCAGAGGTGTGTCTACGCAATTCCAAGTCGCCCTTTACATTACACGGATGAGATGATGAAGCTTGAGAAAGATGTCCAAGAGTCTCGAATTTCTCCTGCAGATTTCCATAAAAAACTGCAAGATGCGGTATCTGGTTTAAAGAATGAGATAGCAAAACATCTGCTGGATCTGAATGTTTCTACCTTTAGCATGGCACCTGTGAAGAGGAAATATGCATTTGAACGATCTGAGATTCCTGCTGGTGAAAATTATGTGGTGAAAGTCAATTATCCTTTCAAGGATCCAGTACTTCCAGTAGACCTCAAAGGAGAAAGTTTTTGTGCAGTTTTAGGCACTCGTTGCAGTGCGCTCGAGCTTTTTCTGATAAAAAGAAAGATAAAGGGGCCTTCATGGCTACAGGTTTCAGACTTTTCCTCCCGCTCAGCTTCTCAAAGGGTTAGCTGGTGCAAATTTGAAGTTACTGTTGACTCTCCTAAAGATATAAGGACTTCAACTTCGTCAAAAATAGCTTTCGAGATTCCTCCTGTGGTTGTCACGGCAATAAACTTGAAAACCACCTTAAATGAAAAACAGAACATAAATGAGATTGTATCTGCATCCGTTGTCTGTTGCAATATGGTTAAGATTGACACTCCTATGTTGGCTTCAGAGTGGAAGAGACCTGGAATGCTGACCCATTTTTCTGTTATTCGTAAACTTGATGGGAATATATTTCCAATGGGATTCAGTAAGGAGGTTACGGACAGAAACTTAAAAGCTGGGTCAAATGTTCTGTGTGTTGAAAGCAGTGAAAGAGCTTTGTTAAATCGCCTGATGTTAGAATTACACAAGTCCGATAGTGATGTTCTTGTTGGACATAATATTTCTGGATTTGACCTGGACGTTCTTCTCCACAGATCCCAGGCTTGCAAAGTACCAAGCAGCATGTGGTCTAAACTAGGCCGTCTCAACCGTTCTGTGATGCCAAAGCTTGATAGAAGAAGCAAGATTTTTGGTTCTGGAGCGGGTCCTGGTATCATGTCTTGCATTGCTGGTCGGCTTCTTTGTGATACATACTTGTGTGCCCGTGACCTATTAAAGGAGGTTAGTTATTCTTTAACTCAACTTGCAAAAACACAGCTGAACAAGTCTCGGAAGGAAGTTGCTCCACATGAACTTCCAAAGAAGTTCCAATCAGCAGAATCCCTAATGGAGCTTATTGAATATGGCGAAACTGATGCATGGTTGTCTATGGAACTCATGTTTCATTTGAGTGTTCTTCCTCTCACACGTCAGCTGACTAATATAAGTGGTAATCTGTGGGGAAAAACTCTTCAGGGTGCTCGGGCACAAAGAGTGGAGTATCTTTTGTTGCATGCTTTCCATGCAAAGAAATATATTGTGCCAGACAAGTTTCCAAACCATGCAAAAGAAACAAAATTGACGAAACGGAGAGTAAGTAATGGTGTTGAGGATAGCAACTTTGACGAAGCGGGTATTGATGATGCGAACTATGATAATGATGCTCCTGACAGTGATCATAAGAAAAGCAAAAAGGGTCCTTCCTATGCCGGGGGACTGGTTTTAGAGCCAAAGAGGGGTCTATATGACAAATATATATTACTTCTGGACTTCAATAGTCTTTATCCTTCTATCATTCAGGAATACAATATCTGCTTCACAACTGTTGAAAGATCTTCAGACGGATCTTTTCCTCGTCTACCATCTAGTAAAACAACTGGAGTCTTGCCAGAGTTGCTGAAAAATCTGGTTCAAAGGAGGAGAATGGTAAAGTCATGGATGAAGACTGCATCTGGTCTTAAAGTTCAGCAACTGGACATTCAGCAGCAAGCACTGAAGCTTACTGCAAACAGTATGTATGGATGCCTGGGATTTTCCAATTCAAGATTTTATGCGAAGCCACTAGCTGAGCTTATAACCCTACAAGGAAGGGAGATCCTGCAGAGTACTGTTGATCTTGTTCAGAATAACTTGAATTTAGAGGTGATCTATGGTGATACTGATTCTATAATGATTTACAGTGGGCTAGATGATATTGCAAAAGCAAAGGCAATGGCTGGAAAAGCTATTCAAGAGGTCAATAAGAAATATAGATGCTTGGAAATTGATCTTGACGGTTTGTATAAGAGGATGTTACTCCTTAAGAAAAAGAAATATGCAGCTGTAAAGGTGCAGTTCAAAGATGGCACACCATACGAGGTTATTGAACGTAAAGGTCTTGACATTGTTCGTCGCGACTGGAGTTTATTAGCTAAAGAATTAGGAGATTTTTGTTTGACTCAAATTTTGTCGGGAGGGTCATGTGAAGATGTCATCGAATCAATTCACAGTTCTCTCATGAAGAAGCAAGAAGAAATGAGGAGTGGACAAGTACCATTAGAGAAATATGTCATCACAAAGACATTGACTAAACCTCCTGATGCTTATCCTGATGCGAAAAACCAGCCACATGTTCTTGTGGCACAAAGATTGAAGCAACAAGGTTACTCCTCTGGTTGCTCTGTTGGTGATACAATCCCTTATATAATTTGCTATGAGCAGGGCTGTAATTCAGGCAGTGCAATGGGCATTGCTCAACGTGCCAGGCATCCTGATGAACTAAAACAAGAACAAGGGACATGGCTGATTGACATTGATTACTATCTGTCGCAACAGATTCATCCTGTGGTATCACGTCTTTGTGCATCAATTCAGGGCACAAGCCCAGAAAGGTTGGCTGATTGTTTAGGGCTTGACTCTTCAAAGTTTCAACATAAATCAAGTGAAGCTTTAGGTGGTGATCCTTCAAGCTCACTCTTGTTTGCTGCTGATGATGAGGAGAGGTATCGGGGATGTGAGCCGTTGGTCTTGTCATGTCCCAGCTGTTCTGGCACTTTTGACTGCCCACCTGTGTTCAAATCTATTTGTTTGTTGGGAAGTGAAAAGCCAACCAGTTTAGGCACGGAGGAATCTGACTACATTTTCTGGCGTAAGCTGTGCTGCCCTAAATGCCCAGAAGATAGTGGTGGTAGAATTTGTCCTGCAATGATAGCCAATCAGGTCAAAAGGCAAGCGGAGAAGTTTGTTTTAATGTACTATAGAGGTCTACTAATGTGTGATGATGAAATGTGTAAGCATACCACGCGAAGGATCAACCTTCGGTTGGTTGGTGATTCAGAGAGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAACGGGCGTCTCCAAAGAAAGTACACTGAAGCAGACTTGTACAAGCAGCTCTCATATTTTTGCCATGTGTTGGATACTGTTTGTTGTATAGAAAAGATGGATGCAAAATCTAGGATACCGTTAGAGAAAGAGTTGATTAAAATTAGACCGATGGTTGATCTGGCAGCATCAACAGTACAGAAGATCAGGGATCGTTGTGCCTATGGGTGGGTGAAGCTGCAGGACCTGCTCATTTCAGTTTAA 4587 0.4378 MGDREATTGKRRPRGAEAAARSEALERLKARLRGGPRSDGGGPQIRLENPIYDSVPEEEYNALVAKRREQARAFIVDDDGLGYGDEGEEEDWSKAGFTLSSDESDGQSERPKRKKLEKKDPQPKRPSSSLSAAAAMMGGQRLSSMFTSSVFKKSRDDKSCDSIVDNVIAEFAPDENDKLRRRRVQVTSLSGANDKPSSDLIGCSFVSETSAKGNGESTRVVENNDCDIGLEQKCEEAVMEIEGHGSSENDQSSMLQVEPSYGDIVEEEVVKDIEIEAKPAMKKEVFTLNAKVEQEEDPALCATAGWQAAKSCAGGGEINVADSRDASNNQQQSEFNLEADGSLPFYILDAHEEFYGANMGTLYLFGKVKAGNLYQSCCIVVKNMQRCVYAIPSRPLHYTDEMMKLEKDVQESRISPADFHKKLQDAVSGLKNEIAKHLLDLNVSTFSMAPVKRKYAFERSEIPAGENYVVKVNYPFKDPVLPVDLKGESFCAVLGTRCSALELFLIKRKIKGPSWLQVSDFSSRSASQRVSWCKFEVTVDSPKDIRTSTSSKIAFEIPPVVVTAINLKTTLNEKQNINEIVSASVVCCNMVKIDTPMLASEWKRPGMLTHFSVIRKLDGNIFPMGFSKEVTDRNLKAGSNVLCVESSERALLNRLMLELHKSDSDVLVGHNISGFDLDVLLHRSQACKVPSSMWSKLGRLNRSVMPKLDRRSKIFGSGAGPGIMSCIAGRLLCDTYLCARDLLKEVSYSLTQLAKTQLNKSRKEVAPHELPKKFQSAESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKFPNHAKETKLTKRRVSNGVEDSNFDEAGIDDANYDNDAPDSDHKKSKKGPSYAGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSSDGSFPRLPSSKTTGVLPELLKNLVQRRRMVKSWMKTASGLKVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKAKAMAGKAIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGTPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVIESIHSSLMKKQEEMRSGQVPLEKYVITKTLTKPPDAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYIICYEQGCNSGSAMGIAQRARHPDELKQEQGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQHKSSEALGGDPSSSLLFAADDEERYRGCEPLVLSCPSCSGTFDCPPVFKSICLLGSEKPTSLGTEESDYIFWRKLCCPKCPEDSGGRICPAMIANQVKRQAEKFVLMYYRGLLMCDDEMCKHTTRRINLRLVGDSERGTVCPNYPRCNGRLQRKYTEADLYKQLSYFCHVLDTVCCIEKMDAKSRIPLEKELIKIRPMVDLAASTVQKIRDRCAYGWVKLQDLLISV 1528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi588g00070 1528 MobiDBLite consensus disorder prediction 1 54 - -
Gabi588g00070 1528 Gene3D Helix hairpin bin 956 1007 - -
Gabi588g00070 1528 MobiDBLite consensus disorder prediction 105 124 - -
Gabi588g00070 1528 Pfam DNA polymerase family B, exonuclease domain 375 751 IPR006133 -
Gabi588g00070 1528 MobiDBLite consensus disorder prediction 1 34 - -
Gabi588g00070 1528 CDD POLBc_alpha 893 1296 IPR045846 GO:0003887|GO:1902975
Gabi588g00070 1528 Pfam DNA Polymerase alpha zinc finger 1320 1524 IPR015088 GO:0003887|GO:0006260
Gabi588g00070 1528 Gene3D - 558 872 IPR036397 GO:0003676
Gabi588g00070 1528 Gene3D - 345 544 - -
Gabi588g00070 1528 SUPERFAMILY Ribonuclease H-like 445 839 IPR012337 -
Gabi588g00070 1528 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 17 1526 - -
Gabi588g00070 1528 FunFam DNA polymerase 958 1007 - -
Gabi588g00070 1528 CDD DNA_polB_alpha_exo 558 809 - -
Gabi588g00070 1528 FunFam DNA polymerase 385 511 - -
Gabi588g00070 1528 Pfam DNA polymerase alpha subunit p180 N terminal 25 92 IPR024647 -
Gabi588g00070 1528 Gene3D - 385 511 - -
Gabi588g00070 1528 Coils Coil 1074 1094 - -
Gabi588g00070 1528 ProSitePatterns DNA polymerase family B signature. 1048 1056 IPR017964 GO:0000166|GO:0003676
Gabi588g00070 1528 NCBIfam DNA polymerase (pol2) 51 1278 - -
Gabi588g00070 1528 Gene3D Palm domain of DNA polymerase 886 1111 IPR023211 -
Gabi588g00070 1528 FunFam DNA polymerase 1124 1309 - -
Gabi588g00070 1528 Pfam DNA polymerase family B 817 1280 IPR006134 GO:0000166|GO:0003677
Gabi588g00070 1528 SUPERFAMILY DNA/RNA polymerases 842 1296 IPR043502 -
Gabi588g00070 1528 Gene3D - 1124 1308 IPR042087 -
Gabi588g00070 1528 FunFam DNA polymerase 558 872 - -
Gabi588g00070 1528 MobiDBLite consensus disorder prediction 78 133 - -
Gabi588g00070 1528 SMART polmehr3 558 1060 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gabi588g00070 1528 Gene3D DNA Polymerase alpha, zinc finger 1319 1514 IPR038256 -
Gabi588g00070 1528 MobiDBLite consensus disorder prediction 856 900 - -
Gabi588g00070 1528 PRINTS DNA-directed DNA-polymerase family B signature 1046 1054 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gabi588g00070 1528 PRINTS DNA-directed DNA-polymerase family B signature 993 1005 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gabi588g00070 1528 PRINTS DNA-directed DNA-polymerase family B signature 917 930 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gabi588g00070 1528 FunFam DNA polymerase 1319 1514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi588g00070 Gabi-Chr588 961335 976032 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi588g00070 2 1526 Core DNA Replication Machinery Family AT5G67100 62.281 0.0 1885
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi588g00070 K02320 - gmx:100798779 2340.84