Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi588g00069 ATGCCCGATCATCCCACTCCCACCATGAATGACCAACTCTCCAACCCAACCTCCATCTTCGGTCTCCGTTTATGGGTTGTTCTCGGCGTTTGCGTTGGCGTTGCCATCGTCCTTCTCCTCTTCCTCATCTCTATCTGGCTCGCTTTCAAGCGTTCCAAGACCAACCCTTCCATCCCAGATGTTTCCAAGGAGATCCAAGAGATCAGACTCGACCATGCCCTCAACCTAAACGGCCCTCCACTTCAACCCGACCCTTTTCCTGAACCCGACCCACTTCCCTCCAACGAACGCCAGGCCCTGCTGACACTACTTCCCCCCGAAGAAGATAACCCGTTGGGGTATAACAGAATTCAGTTTGAGATTGGGAAGAACCATAGGATTTCATACCCTGAACGTGCCTTTGTTAGGTCCAGTTCACATGACCCGAGTGGAGAGGCTCGACCCGTGGATCAGGTTCCTATGGTGATTCCTGAAGTTTCTCATTTGGGTTGGGGCCATTGGTACACTCTCAGGGAGCTTGAGGATTCCACCAATGGCTTCGCACCTGAGAATGTTATTGGTGAAGGCGGCTATGGAATCGTTTACCATGGTATCTTGAAGGACAATAGTCATGTTGCTATTAAGAATTTGCTCAATAATAGGGGACAAGCTGAGAAGGAGTTTAAGGTTGAAGTGGAAGCTATAGGACGAGTTCGCCACAAGAATTTAGTGAGGTTACTAGGTTATTGTGCTGAAGGAGCTCATAGAATGCTTGTGTATGAGTACGTTGACAATGGTAACTTGGAGCAGTGGCTGCATGGGGATGTTGGGCCTTGCAGTCCTCTGACTTGGGAAATTCGAATGAACATTATTCTGGGAACGGCAAAGGGGTTAACTTATCTTCATGAGGGGCTGGAACCAAAAGTTGTTCACCGTGATATTAAATCAAGCAACATTTTGCTTAATAAGCAGTGGAATTCAAAGGTGTCAGACTTTGGCCTTGCCAAACTACTTGGATCTGAGAGCAGCTATATTACAACCCGTGTCATGGGTACATTTGGATATGTAGCTCCTGAATATGCAAGTACTGGCATGTTGAATGAAAGAAGTGATGTTTATAGTTTTGGAATTCTTATTATGGAAGTAATTACAGGCAGGAATCCAGTTGATTATAGTCTGCCTCCAGAAGAGGTGAATTTAGTTGACTGGCTCAAGAAGATGGTTAGTAACAGAAATCCAGAGGGAGTGTTGGATCCCAAGCTCCCTGAGAAACCAACTTCAAGGGCACTAAAGCGGGCCCTTCTTGTAGCCTTACGCTGCACAGACCCTAATGCACAAAAGCGGCCTAAAATGGGGCATGTAATACACATGCTCGAAGCTGAAGATTCCCCTTACAAAGAGGATCGCAGGGCTAGAAGGGATGCAGGACATTTACTTAACAATAGAGTAGAGGATGGATTGAAAGAGGAGGTGACTGTATCGGTTGATGATTGTAAGCTTGATAACGGGATGTGTGCCAATGAGACAAGATCAAACCATCCAGTAGAAAAGCAATAA 1536 0.4635 MPDHPTPTMNDQLSNPTSIFGLRLWVVLGVCVGVAIVLLLFLISIWLAFKRSKTNPSIPDVSKEIQEIRLDHALNLNGPPLQPDPFPEPDPLPSNERQALLTLLPPEEDNPLGYNRIQFEIGKNHRISYPERAFVRSSSHDPSGEARPVDQVPMVIPEVSHLGWGHWYTLRELEDSTNGFAPENVIGEGGYGIVYHGILKDNSHVAIKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYVDNGNLEQWLHGDVGPCSPLTWEIRMNIILGTAKGLTYLHEGLEPKVVHRDIKSSNILLNKQWNSKVSDFGLAKLLGSESSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVITGRNPVDYSLPPEEVNLVDWLKKMVSNRNPEGVLDPKLPEKPTSRALKRALLVALRCTDPNAQKRPKMGHVIHMLEAEDSPYKEDRRARRDAGHLLNNRVEDGLKEEVTVSVDDCKLDNGMCANETRSNHPVEKQ 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi588g00069 511 ProSitePatterns Protein kinases ATP-binding region signature. 186 208 IPR017441 GO:0005524
Gabi588g00069 511 SUPERFAMILY Protein kinase-like (PK-like) 164 452 IPR011009 -
Gabi588g00069 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 302 314 IPR008271 GO:0004672|GO:0006468
Gabi588g00069 511 FunFam Probable serine/threonine-protein kinase At1g01540 160 255 - -
Gabi588g00069 511 ProSiteProfiles Protein kinase domain profile. 180 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi588g00069 511 Gene3D Transferase(Phosphotransferase) domain 1 256 475 - -
Gabi588g00069 511 FunFam Putative receptor-like serine/threonine-protein kinase 256 466 - -
Gabi588g00069 511 Pfam Protein kinase domain 183 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi588g00069 511 CDD STKc_IRAK 186 452 - -
Gabi588g00069 511 PANTHER OS01G0323000 PROTEIN 8 467 - -
Gabi588g00069 511 SMART serkin_6 180 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi588g00069 511 Gene3D Phosphorylase Kinase; domain 1 159 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi588g00069 Gabi-Chr588 952235 955565 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi588g00069 2 447 Trihelix Transcription Factor Family AT1G68690 36.681 4.20e-86 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Gabi588g00069 Pkinase 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi588g00069 - - gmx:100797726 844.343