Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi588g00066 ATGGACGTGGACATATTGAAAACTTCACCAAGTGACAGCAGCATGGACATGATGGCAATGATGATGCAAATGGAAAAGTTCCCGGAATTATCTGAACCTTTTTATAACTCTCTCACCTACCCTGAAATTGATTTCTCAGGTGGAAGCTTCACTAATTCTATTCCTGTTTTCTCAAACATTAACCCAAATGTAACCCCACCCACTTTGATTAACACATCACCATCCTCTTCTAATTTCGTTAACAATGTTCCTCTACAACAACCCATGACACCACCCCTTCAACCCAACGAGGTTGCTCCAACTACAGGGAGGCTCAACGCTTCATTTTCCTACCCTTCATCGGAGAAAAAGAATTCTATTGCAGCCATGAGAGAAATGATTTTCCGAGTAGCAGTTATGCAACCTATTCATATAGACCCAGAATCTGTCAAGCCACCGAAGAGACGCAATGTGAAGATTTCAAAGGATCCGCAGAGTGTGGCAGCAAGACACAGAAGAGAAAGAATAAGCGAGAGAATAAGGATCCTGCAGAGATTAGTTCCTGGTGGGACGAAAATGGACACGGCTTCCATGTTAGATGAAGCCATACACTACGTGAAGTTCTTAAAGAAACAAGTTAAGACGCTGGAAGAAGCAGGGGCAAGTAGACCCTTAAATGTTGTTGGATTCCCAAGGGTGTCCAACGCCAATGTCAATTATTCTGATATATTGAAGGGTTGCCAACCTTGTCAAATGGTGGGTTCTGCTTTTAAACAAATGCTCAGTTGA 768 0.4258 MDVDILKTSPSDSSMDMMAMMMQMEKFPELSEPFYNSLTYPEIDFSGGSFTNSIPVFSNINPNVTPPTLINTSPSSSNFVNNVPLQQPMTPPLQPNEVAPTTGRLNASFSYPSSEKKNSIAAMREMIFRVAVMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVKTLEEAGASRPLNVVGFPRVSNANVNYSDILKGCQPCQMVGSAFKQMLS 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi588g00066 255 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983
Gabi588g00066 255 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 13 244 IPR045843 GO:0003700|GO:0006355
Gabi588g00066 255 Pfam Helix-loop-helix DNA-binding domain 163 202 IPR011598 GO:0046983
Gabi588g00066 255 CDD bHLH_AtIND_like 154 211 - -
Gabi588g00066 255 Gene3D - 152 218 IPR036638 GO:0046983
Gabi588g00066 255 Coils Coil 192 212 - -
Gabi588g00066 255 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 212 IPR036638 GO:0046983
Gabi588g00066 255 SMART finulus 159 208 IPR011598 GO:0046983
Gabi588g00066 255 FunFam BHLH transcription factor 156 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi588g00066 Gabi-Chr588 908962 909729 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi588g00066 11 211 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 53.991 2.92e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi588g00066 HLH 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi588g00066 - - gmx:100796649 294.664