LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi588g00064	ATGGATCAGCGAAAGCTTGTGGTTTTGGGTATTCCGTGGGACGTTGATACTGAGGGCTTGAGGGAATATATGACCAAATTTGGTGAACTGGAAGATTGCGTTGTTATGAAGGAGCGTTCAACTGGACGGTCTCGTGGTTTTGGATATGTTACATTTGCTTCAGTGGATGATGCGAAGGAAGTATTATCAAGCGAACATATTCTTGGTAATAGGATGCTGGAAGTCAAAGTGGCCACACCGAAGGAGGAGATGAGGGCACCAGTCAAAAAAGTTACCAGAATATTTGTGGCCAGGATTCCACAATCAATAACAGAAACAACTTTTAGAAGTCATTTTGAGAAATATGGGGAAATAACAGATTTGTACATGCCAAAGCAGGATCAAGGCTCAAAAACGCATCGTGGAATTGGTTTTATCACTTTTGCAAATGCAGATTCTGTGGAGAATTTGATGTCAGAAACTCATGAACTGGGAGGTTCTACTGTGGTGGTTGATCGAGCTACACCTAAGGAGGACGACTATAAGCCAGTTGGCAGAATGTCCGAGGGAGGATATGGTGCATACAATGCTTATATTTCTCAAGCAACTAGATATGCAGCACTTGGTGCTCCTACTTTGTACGACCATCCTGGCCCAATTTATGGAAGGGGAGAGCCTGCTCGTAGATTTGGTAAAAAGATTTTTGTGGGCCATCTTGCCCCTGAGGCAACCACTGAGGATCTTCGGCAATATTTTGGAAGATTTGGCCGTATATTAGATGTTTATGTTCCCAGGGATCCTAAGAGATCAGGTCATAGAGGTTTTGGATTTGTTACTTTTGCTGAAGATGGTGTAGCAGATCGTGTCTCTCGAAGGTCTCATGAGATTTGTGGACAGCAGGTGGCAATAGATTCAGCCACACCTGTTGATGATGCTGGGCCCAGTGGGAATCTTATGATGAATAGTGTGGATTCTTTTGGGGGATATGGTGGTCCTGTACGAACTTATGGGAGGATGTATGGTAGCTTAGACTTCGATGATTGGGGTTATGGAACTCCCAGTGGTAGACCATCAAGAGCAGATTGGAGGTATAGACCATACTAG	1083	0.4404	MDQRKLVVLGIPWDVDTEGLREYMTKFGELEDCVVMKERSTGRSRGFGYVTFASVDDAKEVLSSEHILGNRMLEVKVATPKEEMRAPVKKVTRIFVARIPQSITETTFRSHFEKYGEITDLYMPKQDQGSKTHRGIGFITFANADSVENLMSETHELGGSTVVVDRATPKEDDYKPVGRMSEGGYGAYNAYISQATRYAALGAPTLYDHPGPIYGRGEPARRFGKKIFVGHLAPEATTEDLRQYFGRFGRILDVYVPRDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPVDDAGPSGNLMMNSVDSFGGYGGPVRTYGRMYGSLDFDDWGYGTPSGRPSRADWRYRPY	360

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi588g00064	360	Gene3D	-	1	84	IPR012677	-
	Gabi588g00064	360	FunFam	heterogeneous nuclear ribonucleoprotein 1	2	83	-	-
	Gabi588g00064	360	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	227	281	IPR000504	GO:0003723
	Gabi588g00064	360	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	94	153	IPR000504	GO:0003723
	Gabi588g00064	360	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	6	64	IPR000504	GO:0003723
	Gabi588g00064	360	SMART	rrm1_1	226	297	IPR000504	GO:0003723
	Gabi588g00064	360	SMART	rrm1_1	5	76	IPR000504	GO:0003723
	Gabi588g00064	360	SMART	rrm1_1	93	165	IPR000504	GO:0003723
	Gabi588g00064	360	FunFam	RNA-binding family protein isoform 1	222	305	-	-
	Gabi588g00064	360	SUPERFAMILY	RNA-binding domain, RBD	2	85	IPR035979	GO:0003676
	Gabi588g00064	360	SUPERFAMILY	RNA-binding domain, RBD	224	324	IPR035979	GO:0003676
	Gabi588g00064	360	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	225	301	IPR000504	GO:0003723
	Gabi588g00064	360	SUPERFAMILY	RNA-binding domain, RBD	89	188	IPR035979	GO:0003676
	Gabi588g00064	360	Gene3D	-	85	174	IPR012677	-
	Gabi588g00064	360	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	4	80	IPR000504	GO:0003723
	Gabi588g00064	360	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	92	169	IPR000504	GO:0003723
	Gabi588g00064	360	Gene3D	-	222	305	IPR012677	-
	Gabi588g00064	360	PANTHER	RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6	224	320	-	-
	Gabi588g00064	360	FunFam	heterogeneous nuclear ribonucleoprotein 1	84	177	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi588g00064	Gabi-Chr588	869547	876025	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi588g00064	6	274	Eukaryotic Initiation Factors Gene Family	AT3G16380	22.101	2.63e-13	68.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi588g00064	K14411		-	gmx:100795240	667.537