LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi588g00063	ATGGATCAGCGAAAGCTTGTGGTTTTGGGTATTCCGTGGGACGTTGATACTGAGGGCTTGAGGGAATATATGACCAAATTTGGTGAACTGGAAGATTGCGTTGTTATGAAGGAGCGTTCAACTGGACGGTCTCGTGGTTTTGGATATGTTACATTTGCTTCAGTGGATGATGCGAAGGAAGTATTATCAAGCGAACATATTCTTGGTAATAGGATGCTGGAAGTCAAAGTGGCCACACCGAAGGAGGAGATGAGGGCACCAGTCAAAAAAGTTACCAGAATATTTGTGGCCAGGATTCCACAATCAATAACAGAAACAACTTTTAGAAGTCATTTTGAGAAATATGGGGAAATAACAGATTTGTACATGCCAAAGGATCAAGGCTCAAAAACGCATCGTGGAATTGGTTTTATCACTTTTGCAAATGCAGATTCTGTGGAGAATTTGATGTCAGAAACTCATGAACTGGGAGGTTCTACTGTGGTGGTTGATCGAGCTACACCTAAGGAGGACGACTATAAGCCAGTTGGCAGAATGTCCGAGGGAGGATATGGTGCATACAATGCTTATATTTCTCAAGCAACTAGATATGCAGCACTTGGTGCTCCTACTTTGTACGACCATCCTGGCCCAATTTATGGAAGGGGAGAGCCTGCTCGTAGATTTGGTAAAAAGATTTTTGTGGGCCATCTTGCCCCTGAGGCAACCACTGAGGATCTTCGGCAATATTTTGGAAGATTTGGCCGTATATTAGATGTTTATGTTCCCAGGGATCCTAAGAGATCAGGTCATAGAGGTTTTGGATTTGTTACTTTTGCTGAAGATGGTGTAGCAGATCGTGTCTCTCGAAGGTCTCATGAGATTTGTGGACAGCAGGTGGCAATAGATTCAGCCACACCTGTTGATGATGCTGGGCCCAGTGGGAATCTTATGATGAATAGTGTGGATTCTTTTGGGGGATATGGTGGTCCTGTACGAACTTATGGGAGGATGTATGGTAGCTTAGACTTCGATGATTGGGGTTATGGAACTCCCAGTGGTAGACCATCAAGAGCAGATTGGAGGTATAGACCATACTAG	1080	0.4398	MDQRKLVVLGIPWDVDTEGLREYMTKFGELEDCVVMKERSTGRSRGFGYVTFASVDDAKEVLSSEHILGNRMLEVKVATPKEEMRAPVKKVTRIFVARIPQSITETTFRSHFEKYGEITDLYMPKDQGSKTHRGIGFITFANADSVENLMSETHELGGSTVVVDRATPKEDDYKPVGRMSEGGYGAYNAYISQATRYAALGAPTLYDHPGPIYGRGEPARRFGKKIFVGHLAPEATTEDLRQYFGRFGRILDVYVPRDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPVDDAGPSGNLMMNSVDSFGGYGGPVRTYGRMYGSLDFDDWGYGTPSGRPSRADWRYRPY	359

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi588g00063	359	FunFam	heterogeneous nuclear ribonucleoprotein 1	84	176	-	-
	Gabi588g00063	359	FunFam	heterogeneous nuclear ribonucleoprotein 1	2	83	-	-
	Gabi588g00063	359	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	94	152	IPR000504	GO:0003723
	Gabi588g00063	359	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	6	64	IPR000504	GO:0003723
	Gabi588g00063	359	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	226	280	IPR000504	GO:0003723
	Gabi588g00063	359	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	224	300	IPR000504	GO:0003723
	Gabi588g00063	359	SMART	rrm1_1	93	164	IPR000504	GO:0003723
	Gabi588g00063	359	SMART	rrm1_1	5	76	IPR000504	GO:0003723
	Gabi588g00063	359	SMART	rrm1_1	225	296	IPR000504	GO:0003723
	Gabi588g00063	359	SUPERFAMILY	RNA-binding domain, RBD	223	323	IPR035979	GO:0003676
	Gabi588g00063	359	SUPERFAMILY	RNA-binding domain, RBD	89	187	IPR035979	GO:0003676
	Gabi588g00063	359	Gene3D	-	221	304	IPR012677	-
	Gabi588g00063	359	Gene3D	-	1	83	IPR012677	-
	Gabi588g00063	359	Gene3D	-	84	196	IPR012677	-
	Gabi588g00063	359	SUPERFAMILY	RNA-binding domain, RBD	2	85	IPR035979	GO:0003676
	Gabi588g00063	359	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	4	80	IPR000504	GO:0003723
	Gabi588g00063	359	PANTHER	RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6	223	319	-	-
	Gabi588g00063	359	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	92	168	IPR000504	GO:0003723
	Gabi588g00063	359	FunFam	RNA-binding family protein isoform 1	221	304	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi588g00063	Gabi-Chr588	869547	876025	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi588g00063	6	273	Eukaryotic Initiation Factors Gene Family	AT3G16380	22.545	5.21e-14	71.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi588g00063	K14411		-	gmx:100795240	672.159