LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi588g00055	ATGTCGCAGCGGTCGGTGCCGGCGCCGTTCTTGTCGAAAACTTATCAGTTGGTGGATGATCCGGCGACGGACGAGGTGATATCATGGAGTGAGAGGGGAAACACTTTTGTGGTGTGGAAACATGCAGAATTTGCAAAGGATTTGCTTCCCAATTATTTTAAGCACAACAACTTCTCCAGCTTTGTTCGCCAGCTCAACACCTATGGATTTCGTAAGATTGCCCCAGACAAATGGGAGTTTGCGAATGAAAATTTTAAGCGAGGGCAGAAGGAGCTCCTCTCCGAGATCAAACGCCGAAAAATTGTGCCCCAATCGTCGGCACAACCCCCGGAGGCAGGAAAATCAGGCGCCGACGGTAATTCTCCGTCGAACTCCGGCGGCAATGAAACGAGGTCCACCTCCACGTCCACATCGTCTTCGAAGAACCCGGAATCGGTGGAGACAACAGCTCCTGAGGGCGCGAATTTATCGAGCGAGAACGAGAAACTGAAGAAGGATAACGAAACGCTAAACTGGGAGCTGGCACGTGCGAAGAAGCAGTGCGATGAGCTGGTAGCTTTTCTGAGGGATCGTCTGAAGGTGGGTCCCGATCAGATCGATCGAATCATGCGGCGTGGAAGCTGTGGTGATGAAAATGCGGTAGGTGAAGGTGGAGGAGACAGTTTGAAACTGTTTGGTGTTTGGTTGAAAGACGAGACTATAAGAAATAACCACAAGAGAGGGCACGACGAACAAATGGGCTTTGGTGGGCCTCGCGCTAAGGAGTTGAAGACTGTTGTTGACTTTGGTGCTGAGAATGTCATCATCAATAGCAACAAGGTTTGTAACTGA	831	0.503	MSQRSVPAPFLSKTYQLVDDPATDEVISWSERGNTFVVWKHAEFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIAPDKWEFANENFKRGQKELLSEIKRRKIVPQSSAQPPEAGKSGADGNSPSNSGGNETRSTSTSTSSSKNPESVETTAPEGANLSSENEKLKKDNETLNWELARAKKQCDELVAFLRDRLKVGPDQIDRIMRRGSCGDENAVGEGGGDSLKLFGVWLKDETIRNNHKRGHDEQMGFGGPRAKELKTVVDFGAENVIINSNKVCN	276

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi588g00055	276	Coils	Coil	160	180	-	-
	Gabi588g00055	276	MobiDBLite	consensus disorder prediction	117	156	-	-
	Gabi588g00055	276	SMART	hsfneu3	6	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gabi588g00055	276	Pfam	HSF-type DNA-binding	10	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gabi588g00055	276	Gene3D	-	2	100	IPR036388	-
	Gabi588g00055	276	MobiDBLite	consensus disorder prediction	96	164	-	-
	Gabi588g00055	276	SUPERFAMILY	"Winged helix" DNA-binding domain	7	99	IPR036390	-
	Gabi588g00055	276	ProSitePatterns	HSF-type DNA-binding domain signature.	49	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gabi588g00055	276	PRINTS	Heat shock factor (HSF) domain signature	10	33	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gabi588g00055	276	PRINTS	Heat shock factor (HSF) domain signature	48	60	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gabi588g00055	276	PRINTS	Heat shock factor (HSF) domain signature	61	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gabi588g00055	276	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	5	193	IPR027725	-
	Gabi588g00055	276	FunFam	Heat stress transcription factor B-4	2	100	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi588g00055	Gabi-Chr588	793336	795928	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi588g00055	2	276	HSF	AT4G36990	55.290	9.93e-85	253

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Gabi588g00055		HSF_DNA-bind	4.9e-34	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi588g00055	K09419		-	gmx:100791543	429.098