Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi588g00034 ATGCGTTGGTTGCACACCCTCATCTCCTCCCATTCTTCCTCTTCTTCCTCTTCTTCTTCTGCAACCCTTGGGTCCTCCCCTTCCTTCTCCTCCCTCCCCGACCCCAAGAAGAAACCATCCTCCGACGCTACCACCCACCGCGGCGGAGCCTGGCTCTTCGGCAGCGGCAGAAAATCGACGCGCTCCAGGAAGCTCCGCCACGTCGGCGATAACGATGCCAGGTGGCATCACGACTCCGACGACGTTAACGTTGTGCCTTTGTCTCGTTCTCCGAGCTGCTTCGTCGACCGAAGCTACAATAGTCGCTCCAATACCTCATCGGTAGCGCCTCAGCCGTTGCCGTTACCGGAGCTGTCATCCCCCGCGCTTCATCGCCAGAGAGACGGGGAATGCCGTTTGCCGTCGCCGAAAGATGCCGCCGGGCCCACCGATAGAGTTGACGGCTCTTTCGACGGCGTCACCTCTGGCTTTCGAATGAGGAGTGTTTTTGCTAGCCAAGAGACAAGAAGGAACATGGAGCAGGTGGAAACAATAAGGTCACCACGGACGACGGTGCGTCAAGAAACGAGTGGTTCTGGAAGCAGACGAAGAGATAGCTTCACGATAAGCGTGCCAGCAAGGAGTGCTCCAAATAGTCCTTTTGCGAGTCCCACAATAAGCCCAACGAATGGGAGGAATATGGATGATTTTGTGCAATATTATTACGTGACACCAAAAGCAAATCAATTCTGGTCTGCACCAGAGATGGCAACATCTTTATCGGGGCTACCACCTCCTGCATTCTTTGATTTATCAGCATTAGGCAATGATCGTATCTCTCCACATCAAAGTCCACGTGCAAGAAGTCCCAACCCCAACCCCAAAAGCCCAACTAGAGCTTCTTCACCCTTACCCAGGTTATCCCTTGAGACCCCAACAACACGCCGTGAAACTATTGCTCCTCTCACTGTTCACCCCTTACCCTTGCCTCCTTGGCCTAACTCAGCCTTATTACCTTCACCATCTGCTACCTTTTCCCCAACTCTGCCTAAGACAGAATCCTTGTCAATGAAAAGCCAATGGCAAAAAGGAAAACTTATTGGCCGAGGTACTTTTGGAAGTGTTTATGTTGCCACCAATAGAGAAACTGGAGCATTGTGTGCAATGAAGGAAGCAGAAATATTTTCTGATGATCCAAAATCTGCGGAGTGTATAAAGCAGTTAGAGCAGGAAATTAAAGTTCTTAGCCATCTGAAACATCCGAACATTGTGCAGTATTATGGTAGTGAAATAGTAGAAGATAAGTTTTATATTTATTTGGAATATATCCATCCCGGTTCAATAAATAAATACGTCCGCGAACATTGTGGTGCGATAACAGAATCTGTTGTTCGGAATTTCACACGCCATATTGTTTCGGGGTTGGCTTACTTGCACAGCAAAAAAACAATTCATAGGGACATCAAAGGGGCTAACTTGCTTGTTGATTCTGCTGGCGTTGTTAAGCTTGCTGACTTTGGGATGGCCAAGCATCTAACTGGGCATGATACTAATCTTTCTTTGAAAGGAAGTCCATACTGGATGGCTCCAGAGCTTATGCAGGCAGTTATGCAGAAAGATAACAGCTCTGATCTAGCTTTTGCTGTTGATATTTGGAGTTTGGGTTGTACAATTATTGAAATGTTCACGGGGAAGCCTCCTTGGAGTGAGTACGAAGGAGCCGCAGCTATGTTTAAGGTTATGAGGGATACCCCTCCTATACCTGAAACATTGTCATCAGAGGGTAAAGATTTCCTGAGGCTTTGCTTTAAAAGAAATCCGGCAGAGAGGCCAACTGCTTCAATGTTACTAGATCATCGATTTCTAAAGAACTTACAACAGTCAGATGTTTCATCTTCCACCCAGCCGTATAATGGAAACACCTTGATGGATAAGCCCCATAGTCCCAGAGTGTTACCTGAAAATAAACCTGATCAGATTTCTATTCCCAGTGTACAGATTGCAAAAGGGAAATCAGCCACTGACAGGTTCTTCTCCGAGATTATCACTAATGCCTCTGGAAGTAACGAGCATCTTCAAGATGGAATTTACTGCCCAAAAATCTAG 2085 0.4719 MRWLHTLISSHSSSSSSSSSATLGSSPSFSSLPDPKKKPSSDATTHRGGAWLFGSGRKSTRSRKLRHVGDNDARWHHDSDDVNVVPLSRSPSCFVDRSYNSRSNTSSVAPQPLPLPELSSPALHRQRDGECRLPSPKDAAGPTDRVDGSFDGVTSGFRMRSVFASQETRRNMEQVETIRSPRTTVRQETSGSGSRRRDSFTISVPARSAPNSPFASPTISPTNGRNMDDFVQYYYVTPKANQFWSAPEMATSLSGLPPPAFFDLSALGNDRISPHQSPRARSPNPNPKSPTRASSPLPRLSLETPTTRRETIAPLTVHPLPLPPWPNSALLPSPSATFSPTLPKTESLSMKSQWQKGKLIGRGTFGSVYVATNRETGALCAMKEAEIFSDDPKSAECIKQLEQEIKVLSHLKHPNIVQYYGSEIVEDKFYIYLEYIHPGSINKYVREHCGAITESVVRNFTRHIVSGLAYLHSKKTIHRDIKGANLLVDSAGVVKLADFGMAKHLTGHDTNLSLKGSPYWMAPELMQAVMQKDNSSDLAFAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMRDTPPIPETLSSEGKDFLRLCFKRNPAERPTASMLLDHRFLKNLQQSDVSSSTQPYNGNTLMDKPHSPRVLPENKPDQISIPSVQIAKGKSATDRFFSEIITNASGSNEHLQDGIYCPKI 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi588g00034 694 MobiDBLite consensus disorder prediction 96 151 - -
Gabi588g00034 694 FunFam Mitogen-activated protein kinase kinase kinase 5 351 652 - -
Gabi588g00034 694 Gene3D Transferase(Phosphotransferase) domain 1 350 643 - -
Gabi588g00034 694 MobiDBLite consensus disorder prediction 1 38 - -
Gabi588g00034 694 MobiDBLite consensus disorder prediction 265 306 - -
Gabi588g00034 694 MobiDBLite consensus disorder prediction 621 650 - -
Gabi588g00034 694 SUPERFAMILY Protein kinase-like (PK-like) 339 653 IPR011009 -
Gabi588g00034 694 MobiDBLite consensus disorder prediction 168 223 - -
Gabi588g00034 694 Pfam Protein kinase domain 355 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi588g00034 694 ProSiteProfiles Protein kinase domain profile. 354 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi588g00034 694 ProSitePatterns Protein kinases ATP-binding region signature. 360 383 IPR017441 GO:0005524
Gabi588g00034 694 SMART serkin_6 354 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi588g00034 694 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 10 627 - -
Gabi588g00034 694 MobiDBLite consensus disorder prediction 1 65 - -
Gabi588g00034 694 MobiDBLite consensus disorder prediction 96 113 - -
Gabi588g00034 694 MobiDBLite consensus disorder prediction 621 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi588g00034 Gabi-Chr588 465948 470631 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi588g00034 1 672 MAP Kinase Kinase Kinase AT5G66850 52.557 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gabi588g00034 Pkinase 4.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi588g00034 - - psat:127120353 875.159