Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi588g00031 ATGGAGCTGAGTTTGGATTTGAGTTTGACCTTTGCCCCCAAAACCATTTCTCTGCTTCTCGGAGACGTTTCTCGTAGCATAGATACCTCTGAAAAACTTTCCATGCTCGAGGACTTTGTGCAAAGATTGGAGGTTGAAATGAGGAAGATCGAAGCCTTCAAACGCGAGCTTCCTCTTTGCGTGATCCTTGTAAATGATGCTGTAGCAAGATTGAAAGAGGAAAAATTCCGGTGTATGGGAACGCAAGATGAACCTGTTACTGAAGAACTCATGCCACCGAAAACCAATTCTGGAGGAAATGGAAATAGACCCTTAACCATGGGAAAGGAAAGCTGTGACAAGAAGAATTGGATGAGCTCAGTTCAGCTATGGAGCACTGAAACCAAATCGAAGAGTGAAGAAAATGTTGGGCCTGTGCCCGAGAACCCAATTCAACCACTGGATAAGAAGAAGGGTAGTGGAGGAGCATTTATAGCATTTAATGGAAATTCGCGTGTCCCCGAGACAGTGTCGAAGGAGGTTTCACAAGTTCCGAGCTTTAGTTTGATGACTCCAGCATCTGAAGTGAGTCATAATAGCAATTCCAAAAGTGGTTGTGGAGGTAATAGTTCTGCCTCGTCTTTGCTCAATCTTGAGTTACAGGATCAACCACAACCACCGCCACATCTGCATCAGAATCCAAGGAAACAAAGGCGATGTTGGTCGCCTGAGCTTCATCGGCGTTTTGTTGACGCGCTTCAACAACTGGGTGGAGCACAAGTGGCCACTCCTAAACAGATTAGAGAACTGATGCAGGTGGAAGGACTCACAAATGATGAAGTAAAAAGCCATTTGCAAAAGTACAGGCTTCATGTTAGAAGATTCCCAGTTTCTTCAGTTGGCCAGGCTAGTAATGGCTTATGGATGACCCAAGATCAATGTGGAGATAAATCAAAGGGAAACTTATCACAATCTGGTTCTCCACAAGGTCCTCTTACACCTCTCCTCATAGGAGGGTCTGTTAAAGGTCTTTCAAGCCCTGGAAGAAACAGCATGGATGCAGAAGATGAGCAATCAGATTGCCGGAATTGGAAAACTGGGGTCCATCAGCAACTAGAAGCTGATAATCAGAGCATCTAA 1119 0.4486 MELSLDLSLTFAPKTISLLLGDVSRSIDTSEKLSMLEDFVQRLEVEMRKIEAFKRELPLCVILVNDAVARLKEEKFRCMGTQDEPVTEELMPPKTNSGGNGNRPLTMGKESCDKKNWMSSVQLWSTETKSKSEENVGPVPENPIQPLDKKKGSGGAFIAFNGNSRVPETVSKEVSQVPSFSLMTPASEVSHNSNSKSGCGGNSSASSLLNLELQDQPQPPPHLHQNPRKQRRCWSPELHRRFVDALQQLGGAQVATPKQIRELMQVEGLTNDEVKSHLQKYRLHVRRFPVSSVGQASNGLWMTQDQCGDKSKGNLSQSGSPQGPLTPLLIGGSVKGLSSPGRNSMDAEDEQSDCRNWKTGVHQQLEADNQSI 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi588g00031 372 MobiDBLite consensus disorder prediction 302 372 - -
Gabi588g00031 372 FunFam Myb family transcription factor 228 286 - -
Gabi588g00031 372 MobiDBLite consensus disorder prediction 357 372 - -
Gabi588g00031 372 SUPERFAMILY Homeodomain-like 227 287 IPR009057 -
Gabi588g00031 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 226 286 IPR017930 -
Gabi588g00031 372 MobiDBLite consensus disorder prediction 86 112 - -
Gabi588g00031 372 MobiDBLite consensus disorder prediction 185 206 - -
Gabi588g00031 372 Pfam Myb-like DNA-binding domain 231 282 IPR001005 -
Gabi588g00031 372 Coils Coil 36 56 - -
Gabi588g00031 372 MobiDBLite consensus disorder prediction 302 324 - -
Gabi588g00031 372 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 15 358 IPR044787 GO:0003700|GO:0006355
Gabi588g00031 372 NCBIfam myb-like DNA-binding domain, SHAQKYF class 229 284 IPR006447 GO:0003677
Gabi588g00031 372 MobiDBLite consensus disorder prediction 125 150 - -
Gabi588g00031 372 Gene3D - 228 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi588g00031 Gabi-Chr588 411649 413530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi588g00031 1 287 G2-like Transcription Factor Family AT2G03500 41.401 2.14e-53 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi588g00031 Myb_DNA-binding 1.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi588g00031 - - pvu:PHAVU_002G021400g 468.774