Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi588g00029 ATGGATCGGCCGGTGGCGATGGCGACCGGAGCTGCCGTGGAGATGCCCATCATGCACGATAGCGACCGGTACGATTTCGTCCGAGATATCGGGTCCGGGAATTTCGCTGTCGCAAGGCTCATGACGGACAAGCACACCAAAGAGCTTGTTGCTGTCAAGTATATCGAACGCGGAGATAAGATTGATGAAAATGTTAAGAGAGAAATCATTAATCACAGGTCTCTGAGACACCCTAACATTGTCAGGTTTAAGGAGGTCATTTTAACACCTACACATCTGGCCATTGTAATGGAATATGCATCTGGAGGAGAACTGTTCGATCGAATCAGCAAAGCAGGGCGTTTTACTGAGGATGAGGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTATTGTCATGCAATGCAAGTATGTCACCGGGACCTGAAGTTGGAAAACACTTTGTTGGATGGGAGCCCAGCACTTCATTTGAAGATATGTGATTTTGGGTACTCCAAGTCTTCATTGCTTCATTCACAACCGAAGTCAACTGTGGGAACTCCAGCATATATTGCTCCAGAAGTATTACTGAAACAAGAGTATGATGGCAAGATTGCAGATGTTTGGTCATGTGGTGTAACCTTATATGTGATGTTAGTGGGATTGTATCCTTTTGAAGATCCTAATGAACCAAAGGATTTCCGGAAGACAATTCAGAGAGTTCTCAGTGTCCAGTATTCCATTCCAGACTTTGTTCAAATATCTCCCGAGTGTCGCAACGTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAGAGAATCACCATTCCTGAAATATTGAAAAATGAATGGTTTCTGAAGAATCTTCCTGCTGACTTGATGGGTGAAAAGATAATGGGAAACCAATTTGAAGAGCCAGATCAGCCCATGCAGAGCATTGATACGATCATGCAAATAATTTCAGAAGCTACCATTCCAGCAGCTGGGACCTATTCTTTAGACCAGTTTATGACTGATAGCATTGATGTTGATGATGACATGGATGAATTAGACTCTGACTTTGAGCTTGATGTAGATAGCAGTGGGGAGATAGTGTATGCCATATAA 1092 0.4341 MDRPVAMATGAAVEMPIMHDSDRYDFVRDIGSGNFAVARLMTDKHTKELVAVKYIERGDKIDENVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFDRISKAGRFTEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPALHLKICDFGYSKSSLLHSQPKSTVGTPAYIAPEVLLKQEYDGKIADVWSCGVTLYVMLVGLYPFEDPNEPKDFRKTIQRVLSVQYSIPDFVQISPECRNVISRIFVFDPAERITIPEILKNEWFLKNLPADLMGEKIMGNQFEEPDQPMQSIDTIMQIISEATIPAAGTYSLDQFMTDSIDVDDDMDELDSDFELDVDSSGEIVYAI 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi588g00029 363 FunFam Serine/threonine-protein kinase SRK2E 15 99 - -
Gabi588g00029 363 SMART serkin_6 24 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi588g00029 363 PANTHER SERINE/THREONINE KINASE 23 292 - -
Gabi588g00029 363 ProSiteProfiles Protein kinase domain profile. 24 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi588g00029 363 Gene3D Transferase(Phosphotransferase) domain 1 100 287 - -
Gabi588g00029 363 Gene3D Phosphorylase Kinase; domain 1 2 99 - -
Gabi588g00029 363 Pfam Protein kinase domain 24 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi588g00029 363 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Gabi588g00029 363 SUPERFAMILY Protein kinase-like (PK-like) 16 316 IPR011009 -
Gabi588g00029 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Gabi588g00029 363 FunFam Serine/threonine-protein kinase SRK2E 100 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi588g00029 Gabi-Chr588 376034 381898 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi588g00029 23 284 CBL-interacting serine-threonine protein kinases AT5G25110 44.526 1.15e-68 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Gabi588g00029 Pkinase 3.4e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi588g00029 K14498 - gmx:100783967 641.343