Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi588g00023 ATGATCCAAGAACTGTTGGGTGGTGCTAGCTTCATATCAGGAGAAAGGAAAATCTCCATTAACGGAGAAGCTCTACTAACACACACACCCTCTCCTAGCTCTCTTCCTTCTTGCACAGCAAGCGTTACCACCACTTCTACAGCTAACGCCGCCGCCACTACCACCACCACCACCACTGCTGCTGCCTCATCAAATTCAGAAAATCAAAACTTGAGGTGCCCGCGATGTGATTCGTCGAACACAAAGTTCTGTTACTACAACAACTACAACCTCACTCAGCCTCGCCACTTCTGCAAGACATGTCGCCGTTACTGGACCAAAGGAGGTGCTCTCAGGAATGTTCCGATCGGAGGTGGCTGCCGGAAAAACAAGAGCGTCAGCGTGTCCAACTCCGTAGCAAAGGTAAGTGCTACAAAGATGAAAGCAGTGGCATCGGAGCTTGGAAGGTCAGGACTTGGTCATGGTTATGATCATGAGCTTCCACTAACCCCTATCCTGTGGGGTTCGCCACAAAATACTCATCTATTGGCTTTAATGAGAGCTAGCCAAAACCAAAACCAAAACCCTAACCCTAACCCTAGTCCCATGTCCATTAATGCTGTTACAGTCAAGGAAGAAGGGAACTTAATGGGATCGCAGTCCCACATGGTGACTGAACCATTGATTGGAAATGGGTTGTTGAATCCTAGAACCCTAGGCTATGATGCTGTTGGACAAGCTCCTTCATTGGGTCTATTCAGCTCTTTTTGGAGAAACAATCAAGAGCAGACACATCAAACAAATAATGGCTTTGTACTTGGAGAACTTCAAAACAGTGGAATTCAAGAACTTTACCATAAGCTCAGGTCATCATCAGTTAATTATTGCAGTGACAGTTCACCAATATTTCTGGGAAACATGGCTTCTTCCCCTTCTTTATCCAACATTTTAGATTCATCTTCAGTTCATGGGAGTGAATTAGGGTGCTGGAATCCAACCGTTTCTTGGTCTGATCCTCCCACAACCAATGGTGCATACCCTTAA 1023 0.4585 MIQELLGGASFISGERKISINGEALLTHTPSPSSLPSCTASVTTTSTANAAATTTTTTTAAASSNSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSVSVSNSVAKVSATKMKAVASELGRSGLGHGYDHELPLTPILWGSPQNTHLLALMRASQNQNQNPNPNPSPMSINAVTVKEEGNLMGSQSHMVTEPLIGNGLLNPRTLGYDAVGQAPSLGLFSSFWRNNQEQTHQTNNGFVLGELQNSGIQELYHKLRSSSVNYCSDSSPIFLGNMASSPSLSNILDSSSVHGSELGCWNPTVSWSDPPTTNGAYP 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi588g00023 340 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 60 252 IPR045174 GO:0003700|GO:0006355
Gabi588g00023 340 Pfam Dof domain, zinc finger 69 125 IPR003851 GO:0003677|GO:0006355
Gabi588g00023 340 ProSitePatterns Zinc finger Dof-type signature. 73 109 IPR003851 GO:0003677|GO:0006355
Gabi588g00023 340 ProSiteProfiles Zinc finger Dof-type profile. 71 125 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi588g00023 Gabi-Chr588 317568 318984 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi588g00023 27 131 C2C2-Dof Transcription Factor Family AT5G65590 56.190 2.56e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi588g00023 zf-Dof 2.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi588g00023 - - gmx:778100 443.351